RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CAPZA1P52907 286 aa8.83□□□□□ -1
VPS39-208ENST00000564994 PROK1P58294 105 aa8.83□□□□□ -1
VPS39-208ENST00000564994 ISL1P61371 349 aa8.83□□□□□ -1
VPS39-208ENST00000564994 ACSM1Q08AH1 577 aa8.83□□□□□ -1
VPS39-208ENST00000564994 TMED1Q13445 227 aa8.83□□□□□ -1
VPS39-208ENST00000564994 TP53I3Q53FA7 332 aa8.83□□□□□ -1
VPS39-208ENST00000564994 NCR3LG1Q68D85 454 aa8.83□□□□□ -1
VPS39-208ENST00000564994 TREML4Q6UXN2 200 aa8.83□□□□□ -1
VPS39-208ENST00000564994 GDPGP1Q6ZNW5 385 aa8.83□□□□□ -1
VPS39-208ENST00000564994 C17orf107Q6ZR85 190 aa8.83□□□□□ -1
VPS39-208ENST00000564994 Q6ZSV7 163 aa8.83□□□□□ -1
VPS39-208ENST00000564994 MKXQ8IYA7 352 aa8.83□□□□□ -1
VPS39-208ENST00000564994 ZNF561Q8N587 486 aa8.83□□□□□ -1
VPS39-208ENST00000564994 ZSCAN4Q8NAM6 433 aaPredicted RBP8.83□□□□□ -1
VPS39-208ENST00000564994 OR4M1Q8NGD0 313 aa8.83□□□□□ -1
VPS39-208ENST00000564994 CITED1Q99966 193 aa8.83□□□□□ -1
VPS39-208ENST00000564994 RBM4BQ9BQ04 359 aaKnown RBP8.83□□□□□ -1
VPS39-208ENST00000564994 DPAGT1Q9H3H5 408 aa8.83□□□□□ -1
VPS39-208ENST00000564994 VPREB3Q9UKI3 123 aa8.83□□□□□ -1
VPS39-208ENST00000564994 POLDIP2Q9Y2S7 368 aa8.83□□□□□ -1
VPS39-208ENST00000564994 CAB39Q9Y376 341 aaPredicted RBP8.83□□□□□ -1
VPS39-208ENST00000564994 RNF114Q9Y508 228 aa8.83□□□□□ -1
VPS39-208ENST00000564994 FAM230AA0A1W2PPH8 454 aa8.82□□□□□ -1
VPS39-208ENST00000564994 J3QRE1 110 aa8.82□□□□□ -1
VPS39-208ENST00000564994 SLC1A7O00341 560 aa8.82□□□□□ -1
VPS39-208ENST00000564994 KCNAB3O43448 404 aa8.82□□□□□ -1
VPS39-208ENST00000564994 SYT7O43581 403 aa8.82□□□□□ -1
VPS39-208ENST00000564994 ENTPD6O75354 484 aa8.82□□□□□ -1
VPS39-208ENST00000564994 TK1P04183 234 aa8.82□□□□□ -1
VPS39-208ENST00000564994 CCL3L1P16619 93 aa8.82□□□□□ -1
VPS39-208ENST00000564994 PAX6P26367 422 aa8.82□□□□□ -1
VPS39-208ENST00000564994 RPL31P62899 125 aaKnown RBP8.82□□□□□ -1
VPS39-208ENST00000564994 IL24Q13007 206 aa8.82□□□□□ -1
VPS39-208ENST00000564994 BLMHQ13867 455 aa8.82□□□□□ -1
VPS39-208ENST00000564994 ZNF273Q14593 569 aa8.82□□□□□ -1
VPS39-208ENST00000564994 RDH10Q8IZV5 341 aa8.82□□□□□ -1
VPS39-208ENST00000564994 BEND2Q8NDZ0 799 aa8.82□□□□□ -1
VPS39-208ENST00000564994 OR5D13Q8NGL4 314 aa8.82□□□□□ -1
VPS39-208ENST00000564994 HRASLS5Q96KN8 279 aa8.82□□□□□ -1
VPS39-208ENST00000564994 PKIBQ9C010 78 aa8.82□□□□□ -1
VPS39-208ENST00000564994 MTCH1Q9NZJ7 389 aa8.82□□□□□ -1
VPS39-208ENST00000564994 OR14J1Q9UGF5 321 aa8.82□□□□□ -1
VPS39-208ENST00000564994 GNG8Q9UK08 70 aa8.82□□□□□ -1
VPS39-208ENST00000564994 SF3B6Q9Y3B4 125 aaKnown RBP8.82□□□□□ -1
VPS39-208ENST00000564994 KIAA2026Q5HYC2 2103 aa8.81□□□□□ -1
VPS39-208ENST00000564994 TGP01266 2768 aa8.81□□□□□ -1
VPS39-208ENST00000564994 LOC107986453A0A1B0GWG9 222 aa8.81□□□□□ -1
VPS39-208ENST00000564994 EI24O14681 340 aa8.81□□□□□ -1
VPS39-208ENST00000564994 ANGPTL7O43827 346 aa8.81□□□□□ -1
VPS39-208ENST00000564994 ZNF737O75373 536 aa8.81□□□□□ -1
VPS39-208ENST00000564994 CLPXO76031 633 aa8.81□□□□□ -1
VPS39-208ENST00000564994 PAHP00439 452 aa8.81□□□□□ -1
VPS39-208ENST00000564994 ATP6V1E1P36543 226 aa8.81□□□□□ -1
VPS39-208ENST00000564994 DLX6P56179 175 aa8.81□□□□□ -1
VPS39-208ENST00000564994 CDC42P60953 191 aa8.81□□□□□ -1
VPS39-208ENST00000564994 COL10A1Q03692 680 aa8.81□□□□□ -1
VPS39-208ENST00000564994 KPNB1Q14974 876 aaKnown RBP8.81□□□□□ -1
VPS39-208ENST00000564994 ZIK1Q3SY52 487 aaPredicted RBP8.81□□□□□ -1
VPS39-208ENST00000564994 MIDNQ504T8 468 aa8.81□□□□□ -1
VPS39-208ENST00000564994 BRICD5Q6PL45 260 aa8.81□□□□□ -1
VPS39-208ENST00000564994 OR2G2Q8NGZ5 317 aa8.81□□□□□ -1
VPS39-208ENST00000564994 TRUB1Q8WWH5 349 aaKnown RBP8.81□□□□□ -1
VPS39-208ENST00000564994 RFKQ969G6 155 aa8.81□□□□□ -1
VPS39-208ENST00000564994 SLAMF9Q96A28 289 aa8.81□□□□□ -1
VPS39-208ENST00000564994 ADAT3Q96EY9 351 aaPredicted RBP8.81□□□□□ -1
VPS39-208ENST00000564994 CHST5Q9GZS9 411 aa8.81□□□□□ -1
VPS39-208ENST00000564994 FAM234AQ9H0X4 552 aa8.81□□□□□ -1
VPS39-208ENST00000564994 C16orf95Q9H693 158 aa8.81□□□□□ -1
VPS39-208ENST00000564994 PLEKHA1Q9HB21 404 aa8.81□□□□□ -1
VPS39-208ENST00000564994 USE1Q9NZ43 259 aa8.81□□□□□ -1
VPS39-208ENST00000564994 IL36RNQ9UBH0 155 aa8.81□□□□□ -1
VPS39-208ENST00000564994 AASSQ9UDR5 926 aa8.81□□□□□ -1
VPS39-208ENST00000564994 SLC7A11Q9UPY5 501 aa8.81□□□□□ -1
VPS39-208ENST00000564994 PRKDCP78527 4128 aaKnown RBP8.8□□□□□ -1
VPS39-208ENST00000564994 IGKV1-9A0A0C4DH69 117 aa8.8□□□□□ -1
VPS39-208ENST00000564994 MEX3AA1L020 520 aaKnown RBP8.8□□□□□ -1
VPS39-208ENST00000564994 MEGF11A6BM72 1044 aa8.8□□□□□ -1
VPS39-208ENST00000564994 BTBD17A6NE02 478 aa8.8□□□□□ -1
VPS39-208ENST00000564994 H3BUX3 64 aa8.8□□□□□ -1
VPS39-208ENST00000564994 K7N7A8 449 aa8.8□□□□□ -1
VPS39-208ENST00000564994 GATBO75879 557 aaKnown RBP8.8□□□□□ -1
VPS39-208ENST00000564994 TSPAN9O75954 239 aa8.8□□□□□ -1
VPS39-208ENST00000564994 INMTO95050 263 aa8.8□□□□□ -1
VPS39-208ENST00000564994 UBCP0CG48 685 aaKnown RBP8.8□□□□□ -1
VPS39-208ENST00000564994 PIPP12273 146 aaPredicted RBP8.8□□□□□ -1
VPS39-208ENST00000564994 BMXP51813 675 aa8.8□□□□□ -1
VPS39-208ENST00000564994 FUT6P51993 359 aa8.8□□□□□ -1
VPS39-208ENST00000564994 NANOS3P60323 173 aaKnown RBP8.8□□□□□ -1
VPS39-208ENST00000564994 SNRPGP62308 76 aaKnown RBP8.8□□□□□ -1
VPS39-208ENST00000564994 SLC25A30Q5SVS4 291 aa8.8□□□□□ -1
VPS39-208ENST00000564994 DHRS7BQ6IAN0 325 aaPredicted RBP8.8□□□□□ -1
VPS39-208ENST00000564994 SLC25A26Q70HW3 274 aa8.8□□□□□ -1
VPS39-208ENST00000564994 CCDC54Q8NEL0 328 aa8.8□□□□□ -1
VPS39-208ENST00000564994 OR5R1Q8NH85 324 aa8.8□□□□□ -1
VPS39-208ENST00000564994 PPP1R35Q8TAP8 253 aa8.8□□□□□ -1
VPS39-208ENST00000564994 RNFT2Q96EX2 444 aa8.8□□□□□ -1
VPS39-208ENST00000564994 CEP19Q96LK0 163 aa8.8□□□□□ -1
VPS39-208ENST00000564994 MBOAT4Q96T53 435 aa8.8□□□□□ -1
VPS39-208ENST00000564994 SSX3Q99909 188 aa8.8□□□□□ -1
VPS39-208ENST00000564994 ADI1Q9BV57 179 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms