RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SNRPD2P62316 118 aaKnown RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 PRB3Q04118 309 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 LOXL1Q08397 574 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ZNF763Q0D2J5 394 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 EGFEM1PQ0D2K5 195 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 FUT5Q11128 374 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 MERTKQ12866 999 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 SKP2Q13309 424 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ZNHIT3Q15649 155 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 UBE2V2Q15819 145 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 MAPK14Q16539 360 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 BCL2A1Q16548 175 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 FAM83EQ2M2I3 478 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 SPRNQ5BIV9 151 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ZNF678Q5SXM1 525 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 DCST2Q5T1A1 773 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 CPTPQ5TA50 214 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 TSPO2Q5TGU0 170 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 HSD17B13Q7Z5P4 300 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 LRP11Q86VZ4 500 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 C4orf33Q8N1A6 199 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 OR2L13Q8N349 312 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 SIGLECL1Q8N7X8 197 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 BBS1Q8NFJ9 593 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 CLDND2Q8NHS1 167 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ZNF563Q8TA94 476 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 FAM110BQ8TC76 370 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 PNPT1Q8TCS8 783 aaKnown RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 DCAKDQ8WVC6 231 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 IFT81Q8WYA0 676 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ANKRD7Q92527 254 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 YIPF5Q969M3 257 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 APH1AQ96BI3 265 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 PPCDCQ96CD2 204 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 LRRC39Q96DD0 335 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 MUCL1Q96DR8 90 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 AURKBQ96GD4 344 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 MS4A4EQ96PG1 132 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 TSPAN32Q96QS1 320 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 NAPGQ99747 312 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-219ENST00000556413 DHRS9Q9BPW9 319 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ERP44Q9BS26 406 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 NAT9Q9BTE0 207 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 OR51J1Q9H342 316 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 DYNLRB1Q9NP97 96 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 DCAF16Q9NXF7 216 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 TAS2R9Q9NYW1 312 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 AHSPQ9NZD4 102 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ONECUT1Q9UBC0 465 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 VPS29Q9UBQ0 182 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 FETUBQ9UGM5 382 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 SNX6Q9UNH7 406 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 CFL2Q9Y281 166 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 SLC25A15Q9Y619 301 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 AP4B1Q9Y6B7 739 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 MXRA5Q9NR99 2828 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 ABCA1O95477 2261 aa1.92□□□□□ -2.1
SCFD1-219ENST00000556413 DSCAMO60469 2012 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 FREM3P0C091 2139 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MED12LQ86YW9 2145 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 STARD9Q9P2P6 4700 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ALPK2Q86TB3 2170 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 EXPH5Q8NEV8 1989 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 IGLV3-32A0A0A0MS00 114 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 EXOC1LA0A1B0GW35 172 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ISPDA4D126 451 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 OR6C65A6NJZ3 312 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ZNF716A6NP11 495 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 LRRN3E7EW58 273 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 E9PLD3 99 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SULT2B1O00204 365 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PPIHO43447 177 aaKnown RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 FCMRO60667 390 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SCN2BO60939 215 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PEX11AO75192 247 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SPAG7O75391 227 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SEC22BO75396 215 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 LYPLA1O75608 230 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 AKR7A3O95154 331 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 STAMBPO95630 424 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 HLA-HP01893 362 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SHBGP04278 402 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SEMG1P04279 462 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 HMGN2P05204 90 aaKnown RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 OR12D1P0DN82 309 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 BCKDHAP12694 445 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 TCP1P17987 556 aaKnown RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 COX5AP20674 150 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PTMSP20962 102 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ATP6V1C1P21283 382 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 PRDX6P30041 224 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MPIP34949 423 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 MAGEA12P43365 314 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 P2RX1P51575 399 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 AQP5P55064 265 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 LCN2P80188 198 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 ZNF154Q13106 437 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SELENBP1Q13228 472 aa1.91□□□□□ -2.1
SCFD1-219ENST00000556413 SNTB2Q13425 540 aaKnown RBP1.91□□□□□ -2.1
SCFD1-219ENST00000556413 OR7A5Q15622 319 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms