RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PRRX2Q99811 253 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 NUDT9Q9BW91 350 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 OPA3Q9H6K4 179 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 MSL2Q9HCI7 577 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 GPR84Q9NQS5 396 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 KLHL13Q9P2N7 655 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 PADI1Q9ULC6 663 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 HSF4Q9ULV5 492 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ENTPD2Q9Y5L3 495 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 NCOR1O75376 2440 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 NOTCH3Q9UM47 2321 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1W2PQF6 199 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 MEX3AA1L020 520 aaKnown RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 PPP5D1E7EU14 171 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 DNASE2O00115 360 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 HCRTR1O43613 425 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CTSVO60911 334 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 SP9P0CG40 484 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 SLC35E2P0CK97 266 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CDAP32320 146 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 TNFRSF4P43489 277 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 GSK3AP49840 483 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 PIGPP57054 158 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CARD18P57730 90 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 C21orf58P58505 322 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM41BQ5BJD5 291 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 OR14L1PQ8NHC6 308 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 UBALD1Q8TB05 177 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 RAB39BQ96DA2 213 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 ARHGAP5-AS1Q96IT6 56 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 C4orf45Q96LM5 186 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 IP6K3Q96PC2 410 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 C19orf43Q9BQ61 176 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 PTGES2Q9H7Z7 377 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 SERTAD4Q9NUC0 356 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 SLC39A9Q9NUM3 307 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 SERTAD3Q9UJW9 196 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 RCL1Q9Y2P8 373 aaKnown RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 ARHGEF17Q96PE2 2063 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 A0A0B4J2E0 115 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 A0A0J9YY10 115 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1B0GX12 115 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 TCRBV21S2A2A0A5A6 115 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CXorf65A6NEN9 183 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CD300LBA8K4G0 201 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 H3BMH7 237 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 HRKO00198 91 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 SULT2B1O00204 365 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 TCAPO15273 167 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 OGG1O15527 345 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 NDUFS6O75380 124 aaKnown RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CRHP06850 196 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 RPL27P61353 136 aaKnown RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 DEFB133Q30KQ1 61 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM268Q5VZI3 342 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 GGNBP1Q5YKI7 109 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 CFAP161Q6P656 301 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 C16orf47Q6ZP98 133 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 MOGAT3Q86VF5 341 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 MCEMP1Q8IX19 187 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 LGI3Q8N145 548 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 COMMD1Q8N668 190 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 BCORP1Q8N888 145 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 EXD3Q8N9H8 876 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 OR8U1Q8NH10 309 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF845Q96IR2 970 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 PGLYRP3Q96LB9 341 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 NRIP2Q9BQI9 281 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 DEFB126Q9BYW3 111 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 LAT2Q9GZY6 243 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 GSN-AS1Q9NRJ2 163 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 MBNL3Q9NUK0 354 aaKnown RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 PIPOXQ9P0Z9 390 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 ST6GALNAC2Q9UJ37 374 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 KLHDC2Q9Y2U9 406 aa4.84□□□□□ -1.63
LIMA1-203ENST00000547825 EP300Q09472 2414 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-203ENST00000547825 TRAV34A0A0B4J273 112 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 A6NIZ1 184 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 H7BYZ3 331 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 RAB27BO00194 218 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 TGOLN2O43493 480 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 GPR137BO60478 399 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 IGHV3-9P01782 118 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 SMIM6P0DI80 62 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 OR5H8P0DN80 308 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 GALP22466 123 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 DPP4P27487 766 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 NTSR1P30989 418 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 NKX2-1P43699 371 aaPredicted RBP4.84□□□□□ -1.64
LIMA1-203ENST00000547825 HAAOP46952 286 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 FHITP49789 147 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 SULT1A1P50225 295 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 DVL1P1P54792 670 aaPredicted RBP4.84□□□□□ -1.64
LIMA1-203ENST00000547825 RAP1BP61224 184 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 SSTP61278 116 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 B2MP61769 119 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 SRSF3P84103 164 aaKnown RBP4.84□□□□□ -1.64
LIMA1-203ENST00000547825 SRYQ05066 204 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 C1orf140Q5VVS0 124 aa4.84□□□□□ -1.64
LIMA1-203ENST00000547825 FCRL6Q6DN72 434 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms