RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZNF681Q96N22 645 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 TMEM208Q9BTX3 173 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 SYNPO2LQ9H987 977 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 ADAP2Q9NPF8 381 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.64□□□□□ -1.67
USP28-213ENST00000544967 FRRS1LQ9P0K9 344 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 KLK13Q9UKR3 277 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 LHX6Q9UPM6 363 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 OSGIN2Q9Y236 505 aa4.64□□□□□ -1.67
USP28-213ENST00000544967 FARSAQ9Y285 508 aaKnown RBP4.64□□□□□ -1.67
USP28-213ENST00000544967 A0A1W2PPK0 400 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 KCNAB3O43448 404 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ZIC2O95409 532 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 TNFRSF1AP19438 455 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 RPL4P36578 427 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 MMP16P51512 607 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 SLC16A1P53985 500 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 HSF1Q00613 529 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 USF2Q15853 346 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 LRRC37A5PQ49AS3 106 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 CCSMST1Q4G0I0 132 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 MIDNQ504T8 468 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PRRT3Q5FWE3 981 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ZNF506Q5JVG8 444 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 RPL7L1Q6DKI1 246 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 C5orf24Q7Z6I8 188 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ZNF101Q8IZC7 436 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 RFLNBQ8N5W9 214 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ZNF614Q8N883 585 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 SUMF2Q8NBJ7 301 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 NOXO1Q8NFA2 376 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 CACNG8Q8WXS5 425 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 RBMXL1Q96E39 390 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 IMMP2LQ96T52 175 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PCGF1Q9BSM1 259 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 SNHG12Q9BXW3 62 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 GPR87Q9BY21 358 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 MRM2Q9UI43 246 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 WDR45Q9Y484 360 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 SNRNP200O75643 2136 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 TRAV1-1A0A0B4J248 108 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 MSGN1A6NI15 193 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 H0Y8G0 127 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 K7EP13 123 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 K7EPK0 472 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 K7N7A8 449 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 CCSO14618 274 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 DEDDO75618 318 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PMP2P02689 132 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ERCC1P07992 297 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 FGF5P12034 268 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PSG6Q00889 435 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 TLE4Q04727 773 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ATXN7L3Q14CW9 347 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 OR2T2Q6IF00 324 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 CDPF1Q6NVV7 123 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 GUSBP11Q6P575 273 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 LHFPL1Q86WI0 220 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PPP1R3BQ86XI6 285 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 LINC01555Q8NAE3 123 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 CPEB3Q8NE35 698 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 OR10A7Q8NGE5 316 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 OR51D1Q8NGF3 324 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 OR52E2Q8NGJ4 325 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 OR51A2Q8NGJ7 313 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PFN4Q8NHR9 129 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 Q8WTZ3 238 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ZMYND19Q96E35 227 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 BSCL2Q96G97 398 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 ABHD14BQ96IU4 210 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 C20orf144Q9BQM9 153 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 TPPP3Q9BW30 176 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 NUDT9Q9BW91 350 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 C1orf43Q9BWL3 253 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 NELFAQ9H3P2 528 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 SRD5A3Q9H8P0 318 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 C20orf141Q9NUB4 165 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 MYOTQ9UBF9 498 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 CKLFQ9UBR5 152 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 OR14J1Q9UGF5 321 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 COLEC10Q9Y6Z7 277 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 TRAV8-7A0A075B6U6 113 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 IGHV5-10-1A0A0J9YXX1 117 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 E5RGE8 158 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 FTCDNL1E5RQL4 147 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 SAP18O00422 153 aaKnown RBP4.63□□□□□ -1.67
USP28-213ENST00000544967 ALOX12BO75342 701 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 IL18BPO95998 194 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ISG15P05161 165 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 TMEM225BP0DP42 221 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PTHLHP12272 177 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 MC5RP33032 325 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 PSMB10P40306 273 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 EFNB2P52799 333 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 GPR18Q14330 331 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 LPAL2Q16609 132 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 FBXW9Q5XUX1 488 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 ULK3Q6PHR2 472 aa4.63□□□□□ -1.67
USP28-213ENST00000544967 UNQ6494/PRO21346Q6UXR6 183 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms