RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 NBEAL1Q6ZS30 2694 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM235A6NFC5 223 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ARPC2O15144 300 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ACTBP60709 375 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ACTG1P63261 375 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 MRPS11P82912 194 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 DHODHQ02127 395 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 EGR4Q05215 589 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 ECH1Q13011 328 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 IFI44LQ53G44 452 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 BHLHA15Q7RTS1 189 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 BHLHE23Q8NDY6 225 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SETD9Q8NE22 299 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM239Q8WW34 195 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 SNHG12Q9BXW3 62 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 AMBRA1Q9C0C7 1298 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM45AQ9NWC5 275 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 HIF1ANQ9NWT6 349 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 MMP24Q9Y5R2 645 aa6.88□□□□□ -1.31
LIMCH1-219ENST00000514096 XKRY2A2RUG3 117 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 TRAPPC13A5PLN9 417 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MBD3L4A6NDZ8 208 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MBD3L3A6NE82 208 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MBD3L5A6NJ08 208 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 F6UZH7 168 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 LYNX1G3V0Z9 82 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 M0R129 80 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MSTNO14793 375 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SNAPC5O75971 98 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 UCHL1P09936 223 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 LYNX1P0DP58 116 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 IGHV1-2P23083 117 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 UCP1P25874 307 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 APLNRP35414 380 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 TIMP3P35625 211 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 PSMA6P60900 246 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 LTBQ06643 244 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 Q6ZPB1 254 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 KCTD9Q7L273 389 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 OR4K13Q8NH42 304 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MBD3L2Q8NHZ7 208 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 UPRTQ96BW1 309 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 RASD2Q96D21 266 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SFXN3Q9BWM7 321 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 A4GALTQ9NPC4 353 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 RBFOX1Q9NWB1 397 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 NTMQ9P121 344 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 PDZD2O15018 2839 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 TRBV4-1A0A0J9YWV2 114 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ANKRD61A6NGH8 418 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 CD8B2A6NJW9 211 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 LIPT2A6NK58 231 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MPTX1A8MV57 137 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 M0QZK8 103 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF205O95201 554 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 EPXP11678 715 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF44P15621 663 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 GZMHP20718 246 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 UCP3P55916 312 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ATP5J2P56134 94 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 LSM6P62312 80 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 CDK5R2Q13319 367 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 TIMM50Q3ZCQ8 353 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 GSG1LQ6UXU4 331 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC35D2Q76EJ3 337 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ZDHHC21Q8IVQ6 265 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 BPIFB2Q8N4F0 458 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 FAM71CQ8NEG0 241 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SMAP2Q8WU79 429 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 PITX2Q99697 317 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 FAAP24Q9BTP7 215 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 KATNB1Q9BVA0 655 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC52A3Q9NQ40 469 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 CISD1Q9NZ45 108 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 FLVCR1Q9Y5Y0 555 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A1W2PQD3 144 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 WIPF3A6NGB9 483 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF587BE7ETH6 402 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 HPRP00739 348 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 FGF7P21781 194 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 NFYAP23511 347 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 CCKARP32238 428 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 CEBPDP49716 269 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 GNMTQ14749 295 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 MEP1BQ16820 701 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC25A35Q3KQZ1 300 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 PTCHD4Q6ZW05 846 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 OR10R2Q8NGX6 335 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 BPIFA2Q96DR5 249 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 Q96M85 177 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ZNF48Q96MX3 618 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 OR8B4Q96RC9 309 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 SYT3Q9BQG1 590 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 THAP7Q9BT49 309 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 NDUFAF3Q9BU61 184 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 HRH4Q9H3N8 390 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 EMC7Q9NPA0 242 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 ACOT13Q9NPJ3 140 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 FAM96BQ9Y3D0 163 aa6.87□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A0A6YYH2 397 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms