RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GAL3ST1Q99999 423 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 CENPOQ9BU64 300 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 REG4Q9BYZ8 158 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 DNAJB11Q9UBS4 358 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 GSTK1Q9Y2Q3 226 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 ABCA2Q9BZC7 2435 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 IGKV1-12A0A0C4DH73 117 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 AIREO43918 545 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 NXPH2O95156 264 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 IGKV1D-12P01611 117 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 ZNF404Q494X3 552 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 TEX36Q5VZQ5 186 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 GPR141Q7Z602 305 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 MUC20Q8N307 709 aaPredicted RBP24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 RNF167Q9H6Y7 350 aa24.81■■□□□ 1.56
LIMCH1-211ENST00000509638 TRAV1-2A0A0B4J238 106 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 F8VVB4 439 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 F8VWA3 439 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 TRAPPC2LH3BP13 241 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 FSTL3O95633 263 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 ERVK11-1P61568 191 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 SMIM21Q3B7S5 101 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 LRRC28Q86X40 367 aaPredicted RBP24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 LYPD6Q86Y78 171 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 FAM90A1Q86YD7 464 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 CDH26Q8IXH8 852 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 SAXO1Q8IYX7 474 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 ZSCAN4Q8NAM6 433 aaPredicted RBP24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 CNTD2Q9H8S5 307 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 TRAV38-1A0A0B4J264 116 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 ACAA1P09110 424 aaPredicted RBP24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 BCL3P20749 454 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 USF1P22415 310 aaPredicted RBP24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 PTGFRP43088 359 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 NPBWR2P48146 333 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 MICBQ29980 383 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 KCTD7Q96MP8 289 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 GFI1Q99684 422 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 TMEM165Q9HC07 324 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 HES4Q9HCC6 221 aa24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 RBFOX1Q9NWB1 397 aaKnown RBP24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 AK6Q9Y3D8 172 aaKnown RBP24.8■■□□□ 1.56
LIMCH1-211ENST00000509638 MUC1P15941 1255 aaPredicted RBP24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 RPL5P46777 297 aaKnown RBP24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 TMEM155Q4W5P6 130 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 GLT8D1Q68CQ7 371 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 SPNS3Q6ZMD2 512 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 C1QL2Q7Z5L3 287 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 Q8IYB0 196 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 SPICQ8N5J4 248 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 CLDND2Q8NHS1 167 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 TMEM246Q9BRR3 403 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 UQCC2Q9BRT2 126 aa24.79■■□□□ 1.56
LIMCH1-211ENST00000509638 ACANP16112 2415 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 ACP7Q6ZNF0 438 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 GDPGP1Q6ZNW5 385 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 MAPK1IP1LQ8NDC0 245 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 PXT1Q8NFP0 134 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 OR4D6Q8NGJ1 314 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 EMG1Q92979 244 aaKnown RBP24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 ELL3Q9HB65 397 aaPredicted RBP24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 RASL12Q9NYN1 266 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 NLKQ9UBE8 527 aa24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 MRPS28Q9Y2Q9 187 aaKnown RBP24.78■■□□□ 1.56
LIMCH1-211ENST00000509638 H7C1Q1 480 aa24.77■■□□□ 1.56
LIMCH1-211ENST00000509638 KDM4BO94953 1096 aa24.77■■□□□ 1.56
LIMCH1-211ENST00000509638 CDRT1O95170 752 aa24.77■■□□□ 1.56
LIMCH1-211ENST00000509638 KCNJ8Q15842 424 aa24.77■■□□□ 1.56
LIMCH1-211ENST00000509638 C12orf43Q96C57 262 aaKnown RBP24.77■■□□□ 1.56
LIMCH1-211ENST00000509638 CEACAM18A8MTB9 384 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 GYPAP02724 150 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 SFTPBP07988 381 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 LSM3P62310 102 aaKnown RBP24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 STUMQ69YW2 141 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 AWAT2Q6E213 333 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 CIARTQ8N365 385 aaPredicted RBP24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 OR5T2Q8NGG2 359 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 FOXRED1Q96CU9 486 aaPredicted RBP24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 HIVEP1P15822 2718 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 MED13LQ71F56 2210 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 PDCD5O14737 125 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 MTNR1BP49286 362 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 OR10A3P58181 314 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 LOXL1Q08397 574 aaPredicted RBP24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 GPR107Q5VW38 600 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 DCDC5Q6ZRR9 648 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 OR10K1Q8NGX5 313 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 S100A13Q99584 98 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 IL36RNQ9UBH0 155 aa24.76■■□□□ 1.55
LIMCH1-211ENST00000509638 SMIM30A4D0T7 59 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 OR2AT4A6NND4 320 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 CALCBP10092 127 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 RAB3BP20337 219 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 IL2RGP31785 369 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 TGFBR1P36897 503 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 RSU1Q15404 277 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 SLC16A12Q6ZSM3 486 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 FAM58AQ8N1B3 248 aa24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 NAA50Q9GZZ1 169 aaKnown RBP24.75■■□□□ 1.55
LIMCH1-211ENST00000509638 PLGRKTQ9HBL7 147 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms