RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ATPAF1Q5TC12 328 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 AADACL4Q5VUY2 407 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 RUSC1-AS1Q66K80 236 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CFAP161Q6P656 301 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4L9Q6RFH8 374 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF322Q6U7Q0 402 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 Q6YL49 198 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 Q6ZRM9 215 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 MOB3CQ70IA8 216 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 BCDIN3DQ7Z5W3 292 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 AMIGO2Q86SJ2 522 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 SLC35F2Q8IXU6 374 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM216BQ8N7L0 139 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 SGMS2Q8NHU3 365 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 OR51E1Q8TCB6 317 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 SEH1LQ96EE3 360 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUS3LQ96G46 650 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 MED30Q96HR3 178 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM71F1Q96KD3 344 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 RAB3IPQ96QF0 476 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 TBX15Q96SF7 602 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CIB1Q99828 191 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 TTTY10Q9BZA0 68 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 SIRPDQ9H106 197 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 PRDM13Q9H4Q3 707 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 ADGRL4Q9HBW9 690 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 GPR84Q9NQS5 396 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CLN6Q9NWW5 311 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 ONECUT1Q9UBC0 465 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 NLKQ9UBE8 527 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 DUX4Q9UBX2 424 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 WARS2Q9UGM6 360 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 NUFIP1Q9UHK0 495 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 ENPP5Q9UJA9 477 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 PIGLQ9Y2B2 252 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 SOX21Q9Y651 276 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 KPTNQ9Y664 436 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 R4GMQ9 66 aa5.6□□□□□ -1.51
CCDC88A-213ENST00000476903 CENPVL3A0A0U1RRI6 287 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ERICH4A6NGS2 130 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR2AT4A6NND4 320 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF732B4DXR9 585 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 LOC110117498-PIK3R3F6TDL0 507 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 AKR7A2O43488 359 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 RHBDL1O75783 438 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 NRASP01111 189 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 TTRP02766 147 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 CRYBA1P05813 215 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 GLRA1P23415 457 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 EPHA2P29317 976 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 TGM4P49221 684 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ARF6P62330 175 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ELF3P78545 371 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 C21orf62-AS1Q17RA5 79 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF684Q5T5D7 378 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 BCL2L15Q5TBC7 163 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 PLCXD3Q63HM9 321 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM200BQ69YZ2 307 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 MZT2BQ6NZ67 158 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 VMO1Q7Z5L0 202 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 CMTM4Q8IZR5 234 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 FGFRL1Q8N441 504 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM86BQ8N661 226 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 KIR3DL3Q8N743 410 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 LY6G5BQ8NDX9 201 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR5T2Q8NGG2 359 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR5A2Q8NGI9 324 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR51G2Q8NGK0 314 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR14K1Q8NGZ2 314 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ANGPTL6Q8NI99 470 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 C8orf46Q8TAG6 207 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF671Q8TAW3 534 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 LRTOMTQ8WZ04 291 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 H1FXQ92522 213 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 LHX4Q969G2 390 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 TMIGD2Q96BF3 282 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 CENPNQ96H22 339 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 GAFA1Q96PS6 74 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 IL4I1Q96RQ9 567 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 APOL4Q9BPW4 351 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 DCTN5Q9BTE1 182 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 GABARAPL3Q9BY60 117 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 FGF23Q9GZV9 251 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 WDR13Q9H1Z4 485 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 SEMA6AQ9H2E6 1030 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR51I2Q9H344 312 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 SNTG1Q9NSN8 517 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 ACOXLQ9NUZ1 547 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 RASL12Q9NYN1 266 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 SLC25A10Q9UBX3 287 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 OR52A1Q9UKL2 312 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 PCDHGB1Q9Y5G3 927 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 SNX5Q9Y5X3 404 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 POMT1Q9Y6A1 747 aa5.59□□□□□ -1.51
CCDC88A-213ENST00000476903 DSCAML1Q8TD84 2053 aa5.59□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PQ09 198 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1W2PQL4 384 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 DHRS7CA6NNS2 312 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 DLGAP1O14490 977 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 SIGLEC5O15389 551 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms