RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-204	ENST00000474025	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	DYNC1I2	Q13409	638 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	CEACAM21	Q3KPI0	293 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ABCA11P	Q4W5N1	156 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	DMRTC1	Q5HYR2	192 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	MINOS1	Q5TGZ0	78 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	CGB2	Q6NT52	195 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	RPL13AP3	Q6NVV1	102 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	HAGHL	Q6PII5	290 aa	Predicted RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	MEPCE	Q7L2J0	689 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	TCF23	Q7RTU1	214 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	C16orf82	Q7Z2V1	217 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ERI1	Q8IV48	349 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	LINC00471	Q8N535	108 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	POC1A	Q8NBT0	407 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR9Q2	Q8NGE9	314 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR8B12	Q8NGG6	310 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR5A2	Q8NGI9	324 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR6N2	Q8NGY6	317 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR4Q3	Q8NH05	313 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZNF671	Q8TAW3	534 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	MUC7	Q8TAX7	377 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	GNPDA2	Q8TDQ7	276 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZNF488	Q96MN9	340 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	HIST1H2AA	Q96QV6	131 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR8B4	Q96RC9	309 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	INTS14	Q96SY0	518 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	HOPX	Q9BPY8	73 aa	Predicted RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	BTBD10	Q9BSF8	475 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	MCRIP2	Q9BUT9	160 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	C1orf21	Q9H246	121 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	VIPAS39	Q9H9C1	493 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	PALMD	Q9NP74	551 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	TBC1D23	Q9NUY8	699 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	GAR1	Q9NY12	217 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	RASL12	Q9NYN1	266 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	LSM4	Q9Y4Z0	139 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	PCDHGB5	Q9Y5G0	923 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	HILPDA	Q9Y5L2	63 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	MINOS1-NBL1	R4GNA1	71 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025		V9GYQ6	96 aa		4.08	□□□□□ -1.76
SNRNP40-204	ENST00000474025	VPS13D	Q5THJ4	4388 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	IGHV2-26	A0A0B4J1V2	119 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025		A0A0U1RQV5	110 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	LCE6A	A0A183	80 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	SH2D7	A6NKC9	451 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025		J3QT63	122 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025		K7N7A8	449 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	NDUFAB1	O14561	156 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	EIF4EBP3	O60516	100 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	NOS1AP	O75052	506 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZNF737	O75373	536 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	NXPH2	O95156	264 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	LYN	P07948	512 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	H2BFM	P0C1H6	154 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	COX4I1	P13073	169 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZNF3	P17036	446 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	CD24	P25063	80 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	NUDT2	P50583	147 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	BLVRA	P53004	296 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ACTA2	P62736	377 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	RPL23A	P62750	156 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ACTG2	P63267	376 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ACTC1	P68032	377 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ACTA1	P68133	377 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	DGCR2	P98153	550 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	PLCXD3	Q63HM9	321 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	GLYAT	Q6IB77	296 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	HACD2	Q6Y1H2	254 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	RASSF6	Q6ZTQ3	369 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	C18orf65	Q6ZTR6	163 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	SHF	Q7M4L6	423 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	TRPM8	Q7Z2W7	1104 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR2W3	Q7Z3T1	314 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OSR2	Q8N2R0	312 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025		Q8NFD4	153 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR2T33	Q8NG76	320 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR51D1	Q8NGF3	324 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR4P4	Q8NGL7	312 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OTOS	Q8NHW6	89 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	RP9	Q8TA86	221 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	NDNF	Q8TB73	568 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	FAM81A	Q8TBF8	368 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	BCAS4	Q8TDM0	211 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	TFAP2C	Q92754	450 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	PYURF	Q96I23	114 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	AKR1E2	Q96JD6	320 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZNF714	Q96N38	554 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	P2RX4	Q99571	388 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	NRIP2	Q9BQI9	281 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	ZNF649	Q9BS31	505 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	SLC25A33	Q9BSK2	321 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	TSSK6	Q9BXA6	273 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	GORASP2	Q9H8Y8	452 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	MED20	Q9H944	212 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	HES4	Q9HCC6	221 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	CMC2	Q9NRP2	79 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	FGFR1OP2	Q9NVK5	253 aa		4.07	□□□□□ -1.76
SNRNP40-204	ENST00000474025	OR14J1	Q9UGF5	321 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 137.2 ms