RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 AANATQ16613 207 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 LRRC75BQ2VPJ9 315 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 TMEM200BQ69YZ2 307 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 SLC35E4Q6ICL7 350 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 SSX6Q7RTT6 188 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 C11orf42Q8N5U0 333 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 YIPF7Q8N8F6 280 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 OR2T27Q8NH04 317 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 PKIBQ9C010 78 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 USE1Q9NZ43 259 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 FBLN5Q9UBX5 448 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 SLC22A13Q9Y226 551 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 AP4S1Q9Y587 144 aa13.49□□□□□ -0.25
CCDC28B-204ENST00000469003 hCG_1809904A0A1W2PP81 198 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 A0A1W2PPE2 198 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 A0A1W2PR64 198 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 A0A1W2PRV1 198 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 TK1P04183 234 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 ERVK11-1P61568 191 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 IL24Q13007 206 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 AMIGO2Q86SJ2 522 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 CATSPERDQ86XM0 798 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 ANGPTL5Q86XS5 388 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 CALHM1Q8IU99 346 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 OR4M1Q8NGD0 313 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 RORBQ92753 470 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 TBX5Q99593 518 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 CIB1Q99828 191 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 OR14J1Q9UGF5 321 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 SLC7A11Q9UPY5 501 aa13.48□□□□□ -0.25
CCDC28B-204ENST00000469003 PRKDCP78527 4128 aaKnown RBP13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 A0A1W2PQL4 384 aaPredicted RBP13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 OR2T7P0C7T2 308 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 FCGR1AP12314 374 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 CCL3L1P16619 93 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 HTR1FP30939 366 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 GABRA5P31644 462 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 RASSF2P50749 326 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 ERVFRD-1P60508 538 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 ZNF273Q14593 569 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 BATF2Q8N1L9 274 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 TRMT10AQ8TBZ6 339 aaKnown RBP13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 PLEKHA1Q9HB21 404 aa13.47□□□□□ -0.25
CCDC28B-204ENST00000469003 FAM230AA0A1W2PPH8 454 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 METTL15A6NJ78 407 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 K7N7A8 449 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 SYT7O43581 403 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 SULT1C4O75897 302 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 TSPAN15O95858 294 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 KIR2DS4P43632 304 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 BMXP51813 675 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 LGALS4P56470 323 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 LY6EQ16553 131 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 ODF4Q2M2E3 257 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 C2orf68Q2NKX9 166 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 C1orf146Q5VVC0 180 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 CRIP3Q6Q6R5 217 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 CCDC54Q8NEL0 328 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 PPP1R35Q8TAP8 253 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 GABARAPL3Q9BY60 117 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 RAB18Q9NP72 206 aa13.46□□□□□ -0.25
CCDC28B-204ENST00000469003 GATBO75879 557 aaKnown RBP13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 ATP5HO75947 161 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 CHRM2P08172 466 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 COX7A1P24310 79 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 POLR2IP36954 125 aaKnown RBP13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 DLX6P56179 175 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 COL10A1Q03692 680 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 TMED1Q13445 227 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 UBE2V2Q15819 145 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 C11orf88Q6PI97 169 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 ASCC1Q8N9N2 400 aaKnown RBP13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 OR10H4Q8NGA5 316 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 OR4C13Q8NGP0 309 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 OR8J1Q8NGP2 316 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 CEP19Q96LK0 163 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 CHST5Q9GZS9 411 aa13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 RANBP3Q9H6Z4 567 aaPredicted RBP13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 TET2Q6N021 2002 aaPredicted RBP13.45□□□□□ -0.26
CCDC28B-204ENST00000469003 IGKV1-27A0A075B6S5 117 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 C17orf98A8MV24 154 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 H3BSH0 61 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF737O75373 536 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 APOL3O95236 402 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 PIPP12273 146 aaPredicted RBP13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 PAX6P26367 422 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 ATP6V1E1P36543 226 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 FUT6P51993 359 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 EFNB2P52799 333 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 HERPUD1Q15011 391 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF782Q6ZMW2 699 aaPredicted RBP13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 LIAT1Q6ZQX7 453 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 EME1Q96AY2 570 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 C10orf35Q96D05 121 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 CENPNQ96H22 339 aaPredicted RBP13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 ADI1Q9BV57 179 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 RIBC2Q9H4K1 309 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 MTCH1Q9NZJ7 389 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 OAZ3Q9UMX2 235 aa13.44□□□□□ -0.26
CCDC28B-204ENST00000469003 SIGLEC9Q9Y336 463 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms