RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TMEM255AQ5JRV8 349 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 PRAMEF6Q5VXH4 476 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 CALHM1Q8IU99 346 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 SCCPDHQ8NBX0 429 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 ACBD4Q8NC06 268 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 OR5H6Q8NGV6 325 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 LILRB1Q8NHL6 650 aaPredicted RBP12.06□□□□□ -0.48
SKA1-202ENST00000398452 ITLN1Q8WWA0 313 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 FAM46BQ96A09 425 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 SLAMF9Q96A28 289 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 SLC25A28Q96A46 364 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 MRPS24Q96EL2 167 aaKnown RBP12.06□□□□□ -0.48
SKA1-202ENST00000398452 MEGF10Q96KG7 1140 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 SAP30LQ9HAJ7 183 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 RHOFQ9HBH0 211 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 HMG20AQ9NP66 347 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 C1orf123Q9NWV4 160 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 RABL2AQ9UBK7 228 aaPredicted RBP12.06□□□□□ -0.48
SKA1-202ENST00000398452 ITGB1BP2Q9UKP3 347 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 RABL2BQ9UNT1 228 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 IGHV3-64DA0A0J9YX35 117 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 TMEM272A0A1B0GTI8 110 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 A0A1B0GWJ7 208 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 CD55P08174 381 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 ADH4P08319 380 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 PPOXP50336 477 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 MAB21L1Q13394 359 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 FAM76BQ5HYJ3 339 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 RAB12Q6IQ22 244 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 BAIAP2L2Q6UXY1 529 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 C20orf204Q6ZNR8 217 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 CDH24Q86UP0 819 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 LYPD6Q86Y78 171 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 LAX1Q8IWV1 398 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 OSR2Q8N2R0 312 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 OR51T1Q8NGJ9 327 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 C15orf40Q8WUR7 153 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 AQP3Q92482 292 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 GTF3AQ92664 365 aaKnown RBP12.05□□□□□ -0.48
SKA1-202ENST00000398452 GAL3ST1Q99999 423 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 SELENOIQ9C0D9 397 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 WDR12Q9GZL7 423 aaKnown RBP12.05□□□□□ -0.48
SKA1-202ENST00000398452 IL36GQ9NZH8 169 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 EXTL2Q9UBQ6 330 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 GLS2Q9UI32 602 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 LAMP3Q9UQV4 416 aa12.05□□□□□ -0.48
SKA1-202ENST00000398452 ANKHD1Q8IWZ3 2542 aaKnown RBP12.04□□□□□ -0.48
SKA1-202ENST00000398452 FABP12A6NFH5 140 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 IFNL4K9M1U5 179 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 CDC14BO60729 498 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 CTAG2O75638 210 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 NXPH2O95156 264 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 CHRM2P08172 466 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 VSIG8P0DPA2 414 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 MGMTP16455 207 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 GLRA1P23415 457 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 CPT2P23786 658 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 MPZP25189 248 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 TNFSF8P32971 234 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 PITPNBP48739 271 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 CCL8P80075 99 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 PITPNAQ00169 270 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 IL18Q14116 193 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 SWI5Q1ZZU3 235 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 FAM131AQ6UXB0 335 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 MOGAT3Q86VF5 341 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 C1orf87Q8N0U7 546 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 OR56B1Q8NGI3 324 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 OR10K1Q8NGX5 313 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 OR10Z1Q8NGY1 313 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 EMG1Q92979 244 aaKnown RBP12.04□□□□□ -0.48
SKA1-202ENST00000398452 WDFY2Q96P53 400 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 FGF23Q9GZV9 251 aaPredicted RBP12.04□□□□□ -0.48
SKA1-202ENST00000398452 BANF2Q9H503 90 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 FBLN5Q9UBX5 448 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 PPP1R3CQ9UQK1 317 aa12.04□□□□□ -0.48
SKA1-202ENST00000398452 APCP25054 2843 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 POLQO75417 2590 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 A0A0A6YYH2 397 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 A6NJ64 397 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 TMEM14DPA8MWL7 114 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 CLDN25C9JDP6 229 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 SYNGR1O43759 233 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 PRKACAP17612 351 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 ELK1P19419 428 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 MNDAP41218 407 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 GATA4P43694 442 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 ZNF45Q02386 682 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 LSAMPQ13449 338 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 ZNF846Q147U1 533 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 ARL6IP1Q15041 203 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 TMEM69Q5SWH9 247 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 OR10K2Q6IF99 312 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 CNIH2Q6PI25 160 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 METAP1DQ6UB28 335 aaPredicted RBP12.03□□□□□ -0.48
SKA1-202ENST00000398452 ASCL4Q6XD76 172 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 RNF144BQ7Z419 303 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 WDR86Q86TI4 376 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 DTX2Q86UW9 622 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 FAM58AQ8N1B3 248 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms