RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 GASTP01350 101 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 BCL2P10415 239 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GLRA1P23415 457 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SPINT3P49223 89 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 LMAN2Q12907 356 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TP53I3Q53FA7 332 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 WDFY1Q8IWB7 410 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 OR2C3Q8N628 320 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GPR32P1Q8NGA4 272 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MTCH1Q9NZJ7 389 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MRPS2Q9Y399 296 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CA11O75493 328 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SLC25A1P53007 311 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CLDN18P56856 261 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CDK5R1Q15078 307 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 VSTM2AQ8TAG5 236 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 JSRP1Q96MG2 331 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM106CQ9BVX2 250 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SEPSECSQ9HD40 501 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 PSENENQ9NZ42 101 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 IL19Q9UHD0 177 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 PIGLQ9Y2B2 252 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 NSDHLQ15738 373 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF385CQ66K41 422 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TXNDC8Q6A555 127 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MOB3CQ70IA8 216 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 LILRA2Q8N149 483 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 LRRC18Q8N456 261 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 OR4X2Q8NGF9 303 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 RNF133Q8WVZ7 376 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 LAMTOR3Q9UHA4 124 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ADAMTS20P59510 1910 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 H3BVH4 76 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TRAPPC6AO75865 159 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 DUSP3P51452 185 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SKP2Q13309 424 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 IZUMO4Q1ZYL8 232 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SLC25A42Q86VD7 318 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 C17orf78Q8N4C9 275 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 RARRES2Q99969 163 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CPEB1Q9BZB8 566 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 BCL2L10Q9HD36 194 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SH2D1BO14796 132 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 DUX1O43812 170 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TUSC2O75896 110 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 LEPROTL1O95214 131 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 HNRNPA1P09651 372 aaKnown RBP eCLIP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 HMGA2P52926 109 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SLC37A1P57057 533 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GABREP78334 506 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CLEC14AQ86T13 490 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TUSC5Q8IXB3 177 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 PQLC3Q8N755 202 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF296Q8WUU4 475 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TFAP2BQ92481 460 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 RBM24Q9BX46 236 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SLC25A18Q9H1K4 315 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 LYRM4Q9HD34 91 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 DYNLRB1Q9NP97 96 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 NHSQ6T4R5 1651 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TCRBV7S3A2A0A539 114 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 OR1D2P34982 312 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GAGE2BQ13066 116 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MFAP5Q13361 173 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GAGE2EQ4V326 116 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL2Q5T653 305 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ANKRD37Q7Z713 158 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 VASH2Q86V25 355 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 OR52N4Q8NGI2 321 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 OR5C1Q8NGR4 320 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TECRQ9NZ01 308 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GAGE2DQ9UEU5 116 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 BOLA1Q9Y3E2 137 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF593O00488 134 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 UBE2CO00762 179 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZBTB25P24278 435 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CA7P43166 264 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SELENOTP62341 195 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MUC15Q8N387 334 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MS4A6EQ96DS6 147 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 FAM103A1Q9BTL3 118 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL37Q9BZE1 423 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF835Q9Y2P0 537 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 KIR2DS5A0A0G2JLQ3 304 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 A0A0G2JNG1 304 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 KIR2DS3K7RE56 304 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PRSS1P07477 247 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 GLIPR1P48060 266 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF157P51786 506 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CKS1BP61024 79 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 LSM11P83369 360 aaKnown RBP eCLIP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 KIR2DS5Q14953 304 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 C22orf39Q6P5X5 142 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PARS2Q7L3T8 475 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ACVR1CQ8NER5 493 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ST8SIA1Q92185 356 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ERGIC1Q969X5 290 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 C20orf27Q9GZN8 174 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 HSFX1Q9UBD0 423 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ADAMTS5Q9UNA0 930 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms