RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 DUX4L5P0CJ88 424 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 DUX4L6P0CJ89 424 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 DUX4L7P0CJ90 424 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 DLX1P56177 255 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 MALLQ13021 153 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 GALEQ14376 348 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 KCNJ8Q15842 424 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 ZNF829Q3KNS6 432 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 SAMD5Q5TGI4 173 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 DUX4L9Q6RFH8 374 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 PGAP1Q75T13 922 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 VMO1Q7Z5L0 202 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 KCTD20Q7Z5Y7 419 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 GCSAMQ8N6F7 178 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 SPRYD4Q8WW59 207 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 ALG8Q9BVK2 526 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 C1orf123Q9NWV4 160 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 ERVK13-1Q9NX77 482 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 DUX4Q9UBX2 424 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 MRM2Q9UI43 246 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 RPUSD1Q9UJJ7 312 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 GTF2A1LQ9UNN4 478 aa13.51□□□□□ -0.25
SHKBP1-215ENST00000597649 IGHV3OR15-7A0A075B7D8 119 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 TRAV38-1A0A0B4J264 116 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 TMEM269A0A1B0GVZ9 245 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 J3QLW9 94 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 NDUFA2O43678 99 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 RPP14O95059 124 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 LHBP01229 141 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 SLC2A1P11166 492 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 ZNF19P17023 458 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 EEF1B2P24534 225 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 OTX1P32242 354 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 DCTDP32321 178 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 ZNF121P58317 390 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 ZNF92Q03936 586 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 CDONQ4KMG0 1287 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 TP53I3Q53FA7 332 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 DHRS7BQ6IAN0 325 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 SLC35E4Q6ICL7 350 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 TMPRSS11AQ6ZMR5 421 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 FAM57BQ71RH2 274 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 LY6G5BQ8NDX9 201 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 PGAM5Q96HS1 289 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 ZNRD1Q9P1U0 126 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 FAM96BQ9Y3D0 163 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 LRRC42Q9Y546 428 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 COL7A1Q02388 2944 aa13.5□□□□□ -0.25
SHKBP1-215ENST00000597649 PLXNB1O43157 2135 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 TENM3Q9P273 2699 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 PRR32B1ATL7 298 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 GMDSO60547 372 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 ECDO95905 644 aaPredicted RBP13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 OPN1MWP04001 364 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 GRPP07492 148 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 OPN1MW2P0DN77 364 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 OPN1MW3P0DN78 364 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 PSMA6P60900 246 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 SNAI3Q3KNW1 292 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 PLPP7Q8NBV4 271 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 ST8SIA4Q92187 359 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 C4orf36Q96KX1 117 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 ADAT1Q9BUB4 502 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 JAM3Q9BX67 310 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 YTHDF1Q9BYJ9 559 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 CCDC90BQ9GZT6 254 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 OR10A2Q9H208 303 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 KAAG1Q9UBP8 84 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 DNAJB11Q9UBS4 358 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 VPREB3Q9UKI3 123 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 SIGLEC9Q9Y336 463 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 PCDHGB5Q9Y5G0 923 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 KPTNQ9Y664 436 aa13.49□□□□□ -0.25
SHKBP1-215ENST00000597649 DNAH9Q9NYC9 4486 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 A0A1W2PRD5 423 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 A0A1W2PRF3 423 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 A0A1W2PRM7 423 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 ACOD1A6NK06 481 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 LOC110117498-PIK3R3F6TDL0 507 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 MYL12BO14950 172 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 RGS10O43665 173 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 CDK1P06493 297 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 CRHBPP24387 322 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 ETV1P50549 477 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 OR12D2P58182 307 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 ZNF684Q5T5D7 378 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 TEX36Q5VZQ5 186 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 MRPL21Q7Z2W9 205 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 C11orf53Q8IXP5 236 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 SYS1Q8N2H4 156 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 PNKDQ8N490 385 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 Q8N7P7 452 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 OR52H1Q8NGJ2 320 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 OR2AE1Q8NHA4 323 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 PPP1R35Q8TAP8 253 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 SLC22A4Q9H015 551 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 FKBP14Q9NWM8 211 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 ERGIC3Q9Y282 383 aa13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 CAB39Q9Y376 341 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-215ENST00000597649 SNX5Q9Y5X3 404 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms