RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 CPEB3Q8NE35 698 aaKnown RBP16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 LRRC20Q8TCA0 184 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 EMG1Q92979 244 aaKnown RBP16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 CDC6Q99741 560 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 FAM166BA8MTA8 275 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 LINC01387J3KSC0 135 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 MRPL33O75394 65 aaKnown RBP16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 MT-CO3P00414 261 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 CRHP06850 196 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 ITGA3P26006 1051 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 MAGEA5P43359 124 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 RBP2P50120 134 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 UBA52P62987 128 aaKnown RBP16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 TAF9Q16594 264 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 CHRFAM7AQ494W8 412 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 PABPC1L2AQ5JQF8 200 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 RPUSD3Q6P087 351 aaKnown RBP16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 LINC00696Q6ZRV3 163 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 ACOT7LQ6ZUV0 252 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 OR1S1Q8NH92 325 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 BORCS8Q96FH0 119 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 LOXL4Q96JB6 756 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 SCGB3A2Q96PL1 93 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 SLC7A10Q9NS82 523 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 MBD2Q9UBB5 411 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 KCNMB2Q9Y691 235 aa16.09■□□□□ 0.17
PRPF40B-208ENST00000548436 ZNF587BE7ETH6 402 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 KCNAB3O43448 404 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 SCO1O75880 301 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 CSTBP04080 98 aaKnown RBP16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 EDN3P14138 238 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 PPA1Q15181 289 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 ANKRD55Q3KP44 614 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 RTL6Q6ICC9 239 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 LHFPL2Q6ZUX7 228 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 ZSCAN4Q8NAM6 433 aaPredicted RBP16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 RELL2Q8NC24 303 aaPredicted RBP16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 THAP6Q8TBB0 222 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 FAAP24Q9BTP7 215 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 TTTY12Q9BZ98 90 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 SLC6A15Q9H2J7 730 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 IL17BQ9UHF5 180 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 ZNF391Q9UJN7 358 aa16.08■□□□□ 0.16
PRPF40B-208ENST00000548436 IGKV1-12A0A0C4DH73 117 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 KANTRA0A1W2PQU2 76 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 BCL2L11O43521 198 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 ADAP1O75689 374 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 IGKV1D-12P01611 117 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 FAM209AQ5JX71 171 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 ASCL4Q6XD76 172 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 ZNF100Q8IYN0 542 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 NMES1Q9C002 83 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 RGCCQ9H4X1 137 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 CHMP1AQ9HD42 196 aaPredicted RBP16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 B4GALT7Q9UBV7 327 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 MPTX1A8MV57 137 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 TEX46H3BTG2 121 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 FARS2O95363 451 aaKnown RBP16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 RPS2P15880 293 aaKnown RBP16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 PSMB6P28072 239 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 LUMP51884 338 aaPredicted RBP16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 C9orf135Q5VTT2 229 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 DHRS13Q6UX07 377 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 TUSC5Q8IXB3 177 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 NAXEQ8NCW5 288 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 CPNE2Q96FN4 548 aaPredicted RBP16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 CCDC120Q96HB5 630 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 ZNF75AQ96N20 296 aa16.07■□□□□ 0.16
PRPF40B-208ENST00000548436 ZNF708P17019 499 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 ARF1P84077 181 aaKnown RBP16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 OR8B8Q15620 311 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 PDZD9Q8IXQ8 264 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 AK3Q9UIJ7 227 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 R4GN57 208 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 A0A0B4J2A0 478 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 ZNHIT1O43257 154 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 FOXG1P55316 489 aaPredicted RBP16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 NRN1LQ496H8 165 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 FAM74A1Q5RGS3 127 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 MOB3CQ70IA8 216 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 TMEM251Q8N6I4 163 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 PIGCQ92535 297 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 RNF126Q9BV68 326 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 C1QTNF5Q9BXJ0 243 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 LINC00470Q9BZP3 86 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 CALHM2Q9HA72 323 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 RAB18Q9NP72 206 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 ABI3Q9P2A4 366 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 SHPKQ9UHJ6 478 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 HSF4Q9ULV5 492 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 CSAG2Q9Y5P2 127 aa16.06■□□□□ 0.16
PRPF40B-208ENST00000548436 ARHGAP21Q5T5U3 1957 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 A0A096LPE4 126 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 A0A1W2PPZ6 126 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 RRADP55042 308 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 PIGYQ3MUY2 71 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 NSUN5P2Q63ZY6 315 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 FNDC9Q8TBE3 224 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 SPSB4Q96A44 273 aa16.05■□□□□ 0.16
PRPF40B-208ENST00000548436 SULT4A1Q9BR01 284 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms