RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 HPNP05981 417 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 RNF224P0DH78 156 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 MUC1P15941 1255 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 PNLIPP16233 465 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SPINK2P20155 84 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 HNF1AP20823 631 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 FMODQ06828 376 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 FUT5Q11128 374 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 SLC17A1Q14916 467 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 TSPO2Q5TGU0 170 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 PLXDC2Q6UX71 529 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 TMPRSS11FQ6ZWK6 438 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 UEVLDQ8IX04 471 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 C20orf196Q8IYI0 205 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CMTM1Q8IZ96 169 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 LINC00469Q8N7U9 141 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ADAD2Q8NCV1 583 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR56B1Q8NGI3 324 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR51F2Q8NH61 342 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR51H1Q8NH63 302 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 PIGCQ92535 297 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 CPNE4Q96A23 557 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 LPAR4Q99677 370 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 TPSD1Q9BZJ3 242 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 OR10A2Q9H208 303 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 TMPRSS5Q9H3S3 457 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 C1orf198Q9H425 327 aa4.86□□□□□ -1.63
LIMA1-203ENST00000547825 MRM2Q9UI43 246 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 MRPS2Q9Y399 296 aaKnown RBP4.86□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF727A8MUV8 499 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 AP4M1O00189 453 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 YKT6O15498 198 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ANGPTL7O43827 346 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ABHD16AO95870 558 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 MBP02144 154 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 THY1P04216 161 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF728P0DKX0 622 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FASLGP48023 281 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 KIR2DS3Q14952 304 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 CD200R1LQ6Q8B3 271 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 C16orf54Q6UWD8 224 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 CLEC1AQ8NC01 280 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 C16orf52Q8NHV5 167 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ASB17Q8WXJ9 295 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 OR1E3Q8WZA6 343 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TVP23CQ96ET8 276 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 PAPOLGQ9BWT3 736 aaKnown RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 PLK3Q9H4B4 646 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 GCM1Q9NP62 436 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 LHX9Q9NQ69 397 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 MMP26Q9NRE1 261 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 HEATR1Q9H583 2144 aaKnown RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TMED7-TICAM2A0A0A6YYA0 188 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF816-ZNF321PA0A0X1KG74 233 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 PIN1P1O15428 100 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ST8SIA3O43173 380 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 HEXBP07686 556 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 GUSBP08236 651 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 BMP5P22003 454 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 BLKP51451 505 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 POLR2GP62487 172 aaKnown RBP eCLIP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM176BQ3YBM2 270 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM128Q5BJH2 165 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 PRAMEF20Q5VT98 475 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 OR8G2PQ6IF36 304 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FAM185AQ8N0U4 392 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF321PQ8N8H1 164 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 OR13C8Q8NGS7 320 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 SLC25A38Q96DW6 304 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 C8orf33Q9H7E9 229 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FLRT3Q9NZU0 649 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FBXL17Q9UF56 701 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 LAMP3Q9UQV4 416 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FLVCR1Q9Y5Y0 555 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1B0GV90 55 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 SSSCA1O60232 199 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ICOSLGO75144 302 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ONECUT2O95948 504 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 HPP00738 406 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 IFNA1P01562 189 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FGF2P09038 288 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 CT62P0C5K7 136 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 RAB5AP20339 215 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM33P57088 247 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TAS2R46P59540 309 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ERVFRD-1P60508 538 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 MFGE8Q08431 387 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 HMGN3Q15651 99 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TOMM34Q15785 309 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF74Q16587 644 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 OR2B11Q5JQS5 317 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 SLC35D3Q5M8T2 416 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 FAM199XQ6PEV8 388 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 UQCC3Q6UW78 93 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 TIPARPQ7Z3E1 657 aaKnown RBP4.85□□□□□ -1.63
LIMA1-203ENST00000547825 WDR5BQ86VZ2 330 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 OR52N4Q8NGI2 321 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 SEH1LQ96EE3 360 aa4.85□□□□□ -1.63
LIMA1-203ENST00000547825 C2orf50Q96LR7 162 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms