RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 C11orf53Q8IXP5 236 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 JAGN1Q8N5M9 183 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 C19orf18Q8NEA5 215 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 WFDC11Q8NEX6 87 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 PHYHIPQ92561 330 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 SLAMF9Q96A28 289 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 PPIL3Q9H2H8 161 aaKnown RBP12.6□□□□□ -0.39
NUP54-213ENST00000513352 ELL3Q9HB65 397 aaPredicted RBP12.6□□□□□ -0.39
NUP54-213ENST00000513352 WIPI2Q9Y4P8 454 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 NPTNQ9Y639 398 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 CSMD2Q7Z408 3487 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 TRIM64BA6NI03 449 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 C3orf80F5H4A9 247 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 GPX5O75715 221 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 SLC25A16P16260 332 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 EGR1P18146 543 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 SRMP19623 302 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 ZNF93P35789 620 aaPredicted RBP12.59□□□□□ -0.39
NUP54-213ENST00000513352 BTG1P62324 171 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 RIN1Q13671 783 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 TIMM50Q3ZCQ8 353 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 SFRP4Q6FHJ7 346 aaPredicted RBP12.59□□□□□ -0.39
NUP54-213ENST00000513352 CD200R1LQ6Q8B3 271 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 RNF144BQ7Z419 303 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 GPR141Q7Z602 305 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 MKXQ8IYA7 352 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 PNLDC1Q8NA58 520 aaKnown RBP12.59□□□□□ -0.39
NUP54-213ENST00000513352 DEFB108BQ8NET1 73 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 OR10Z1Q8NGY1 313 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 TNFAIP8L1Q8WVP5 186 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 TMIGD2Q96BF3 282 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 ZNF488Q96MN9 340 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 PKIBQ9C010 78 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 DNAJB11Q9UBS4 358 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 GSTK1Q9Y2Q3 226 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 MYO9AB2RTY4 2548 aa12.59□□□□□ -0.39
NUP54-213ENST00000513352 PPIAL4EA0A075B759 164 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 IGHV3OR15-7A0A075B7D8 119 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 PPIAL4DF5H284 164 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 TRAPPC2LH3BP13 241 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 WNT9BO14905 357 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 ANGPTL7O43827 346 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 AIREO43918 545 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 NXPH2O95156 264 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 ALDOBP05062 364 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 PPIAL4FP0DN26 164 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 GALP22466 123 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 GLRA1P23415 457 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 GIFP27352 417 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 NR4A2P43354 598 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 IL24Q13007 206 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 PDZK1IP1Q13113 114 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 GCSAMQ8N6F7 178 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 NKAIN3Q8N8D7 197 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 OR13F1Q8NGS4 319 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 YIPF6Q96EC8 236 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 GAL3ST1Q99999 423 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 SNTG1Q9NSN8 517 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 TXNL4BQ9NX01 149 aaKnown RBP12.58□□□□□ -0.4
NUP54-213ENST00000513352 PPIAL4AQ9Y536 164 aa12.58□□□□□ -0.4
NUP54-213ENST00000513352 MEGF11A6BM72 1044 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 RNF223E7ERA6 249 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 LGALS8O00214 317 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 IGHV2-70P01814 119 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 TFAP2AP05549 437 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 MPZP25189 248 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 OR3A4PP47883 348 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 LSM3P62310 102 aaKnown RBP12.57□□□□□ -0.4
NUP54-213ENST00000513352 ZMYND11Q15326 602 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 GLT8D1Q68CQ7 371 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 DNM1P46Q6ZS02 220 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 LRRTM1Q86UE6 522 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 POC1AQ8NBT0 407 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 OR51F2Q8NH61 342 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 CEP19Q96LK0 163 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 S100A13Q99584 98 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 FUNDC2Q9BWH2 189 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 SMURF1Q9HCE7 757 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 PCDHB10Q9UN67 800 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 ING4Q9UNL4 249 aa12.57□□□□□ -0.4
NUP54-213ENST00000513352 TRAV38-1A0A0B4J264 116 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 OOEPA6NGQ2 149 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 SRRM5B3KS81 715 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 PDCD5O14737 125 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 PGA5P0DJD9 388 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 ADRA2CP18825 462 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 BCL3P20749 454 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 FGF9P31371 208 aaPredicted RBP12.56□□□□□ -0.4
NUP54-213ENST00000513352 CFHR2P36980 270 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 MDH2P40926 338 aaKnown RBP12.56□□□□□ -0.4
NUP54-213ENST00000513352 ALDH3B2P48448 385 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 SNU13P55769 128 aaKnown RBP12.56□□□□□ -0.4
NUP54-213ENST00000513352 MICBQ29980 383 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 GPR107Q5VW38 600 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 EMG1Q92979 244 aaKnown RBP12.56□□□□□ -0.4
NUP54-213ENST00000513352 SEH1LQ96EE3 360 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 KCTD7Q96MP8 289 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 REG4Q9BYZ8 158 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 WDR13Q9H1Z4 485 aa12.56□□□□□ -0.4
NUP54-213ENST00000513352 RNF167Q9H6Y7 350 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms