RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MPPED1O15442 326 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 AMY2AP04746 511 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF121P58317 390 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 RPL11P62913 178 aaKnown RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 CSNK2A1P68400 391 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 RUNX3Q13761 415 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ACER2Q5QJU3 275 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FAM90A2PQ658T7 463 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 VHLLQ6RSH7 139 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF695Q8IW36 515 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FBXL14Q8N1E6 418 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 BATF2Q8N1L9 274 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 CSNK2A3Q8NEV1 391 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 OR4C3Q8NH37 302 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 MSI2Q96DH6 328 aaKnown RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FAM234AQ9H0X4 552 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 DPH3P1Q9H4G8 78 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FAM212BQ9NTI7 297 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 OR2W5A6NFC9 320 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 SERPINE3A8MV23 424 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 PTHLHP12272 177 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 CD99P14209 185 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 DLSTP36957 453 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 FOXO1Q12778 655 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 PNRC1Q12796 327 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 RSPO4Q2I0M5 234 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM56Q96MV1 263 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 VRK1Q99986 396 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF768Q9H5H4 540 aaKnown RBP4.71□□□□□ -1.66
SYNE1-220ENST00000471834 HS3ST3A1Q9Y663 406 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 R4GMQ9 66 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM56-RWDD3S4R434 201 aa4.71□□□□□ -1.66
SYNE1-220ENST00000471834 A0A1W2PNV4 684 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 F5H0A9 414 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BKO60814 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BJP06899 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BOP23527 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 CHATP28329 748 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BBP33778 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 LGALS4P56470 323 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BDP58876 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BCP62807 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 GNB2P62879 340 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 MESP2Q0VG99 397 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST2H2BEQ16778 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM211Q6ICI0 200 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 BPIFB2Q8N4F0 458 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BHQ93079 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 WDR92Q96MX6 357 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BNQ99877 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 HIST1H2BMQ99879 126 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PLEKHJ1Q9NW61 149 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PRODH2Q9UF12 536 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 UBE2J1Q9Y385 318 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 IER3IP1Q9Y5U9 82 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 IGLV3-12A0A075B6K2 115 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF736B4DX44 427 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TRDCB7Z8K6 153 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 SRP19P09132 144 aaKnown RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 CT62P0C5K7 136 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 RBMXP38159 391 aaKnown RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 FABP9Q0Z7S8 132 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 C4orf17Q53FE4 359 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 WBP2NLQ6ICG8 309 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 ACBD4Q8NC06 268 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 STT3BQ8TCJ2 826 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 NANOS1Q8WY41 292 aaKnown RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 IP6K3Q96PC2 410 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 RBM24Q9BX46 236 aaKnown RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM74BQ9NUR3 256 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 FBXO4Q9UKT5 387 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 H0Y8G0 127 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DVL1O14640 695 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 AGPAT2O15120 278 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TLE3Q04726 772 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 C10orf128Q5T292 105 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 RTL6Q6ICC9 239 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 CYB561A3Q8NBI2 242 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 SLC46A1Q96NT5 459 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 P2RX4Q99571 388 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PSMG3Q9BT73 122 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PLEKHA3Q9HB20 300 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF160Q9HCG1 818 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 MRPS2Q9Y399 296 aaKnown RBP4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PMP2P02689 132 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 FBXO45P0C2W1 286 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DTYMKP23919 212 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 GABRA2P47869 451 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PRKXP51817 358 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 METAP1P53582 386 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DCAF7P61962 342 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 IGSF11Q5DX21 431 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 OR2B11Q5JQS5 317 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 PLAC9Q5JTB6 97 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 DMRTA1Q5VZB9 504 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM234Q8WY98 164 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 MVB12AQ96EY5 273 aa4.7□□□□□ -1.66
SYNE1-220ENST00000471834 SIGLEC12Q96PQ1 595 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms