RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 HS3ST3A1Q9Y663 406 aa7.61□□□□□ -1.19
USP40-203ENST00000427112 SMG1Q96Q15 3661 aaKnown RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 A0A096LPE4 126 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 IGHV1OR15-9A0A0B4J2B8 117 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 A0A1W2PPZ6 126 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 RNASEK-C17orf49H0YIS7 233 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 HIST1H1DP16402 221 aaKnown RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 PTAFRP25105 342 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 P2RY4P51582 365 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 TMEM33P57088 247 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 MEF2DQ14814 521 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 ABCA11PQ4W5N1 156 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 MIDNQ504T8 468 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 SLC25A24Q6NUK1 477 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 SLC23A3Q6PIS1 610 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 OR5AS1Q8N127 324 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 ZFP62Q8NB50 900 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 OR56B1Q8NGI3 324 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 MFSD8Q8NHS3 518 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 PIGCQ92535 297 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 DEFB126Q9BYW3 111 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 PURGQ9UJV8 347 aaKnown RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 CACNA1HO95180 2353 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 ATRXP46100 2492 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 PHYHO14832 338 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 TCAPO15273 167 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 SCRG1O75711 98 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 TSPAN15O95858 294 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 IGFBP3P17936 291 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 RAB13P51153 203 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 MAJINQ3KP22 176 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 DHRS11Q6UWP2 260 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 ZNF574Q6ZN55 896 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 SLC25A45Q8N413 288 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 OR5T1Q8NG75 326 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 DTD1Q8TEA8 209 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 RNF141Q8WVD5 230 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 HPSE2Q8WWQ2 592 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 TMEM234Q8WY98 164 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 NECAB3Q96P71 396 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 KCNK17Q96T54 332 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 RARRES2Q99969 163 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 PIGMQ9H3S5 423 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 C14orf166Q9Y224 244 aaKnown RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 A0A1B0GTI1 187 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 ZNF705FA8MVS1 300 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 OR7C1O76099 320 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 ZNF705DP0CH99 300 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 ZNF705BP0CI00 300 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 ZNF44P15621 663 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 RPS2P15880 293 aaKnown RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 ZNF16P17020 682 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 RPL12P30050 165 aaKnown RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 CAMLGP49069 296 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 PCK2Q16822 640 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 NKAIN1Q4KMZ8 207 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 EMC4Q5J8M3 183 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 DNM1P34Q6PK57 102 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 SULF2Q8IWU5 870 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 VPS25Q9BRG1 176 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 RTBDNQ9BSG5 229 aaPredicted RBP7.6□□□□□ -1.19
USP40-203ENST00000427112 LIME1Q9H400 295 aa7.6□□□□□ -1.19
USP40-203ENST00000427112 USF3Q68DE3 2245 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 LTBP2Q14767 1821 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 MUC22E2RYF6 1773 aaPredicted RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 A0A1B0GX78 115 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 MEGF11A6BM72 1044 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 TNFSF11O14788 317 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 DUS4LO95620 317 aaKnown RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 CFIP05156 583 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 OR5AC1P0C628 307 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 GABRA4P48169 554 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 DAP3P51398 398 aaKnown RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 PIGPP57054 158 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 MRPS21P82921 87 aaKnown RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 TMEM128Q5BJH2 165 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 C5orf46Q6UWT4 87 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 MAML2Q8IZL2 1156 aaPredicted RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 MARVELD3Q96A59 401 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 DDIT4LQ96D03 193 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 CYTL1Q9NRR1 136 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 FTCDNL1E5RQL4 147 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 IGHG1P01857 330 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 RUNX1Q01196 453 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 RSU1Q15404 277 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 ZNF774Q6NX45 483 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 ZNF343Q6P1L6 599 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 ZNF705AQ6ZN79 300 aaPredicted RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 OR52M1Q8NGK5 317 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 RPS4Y2Q8TD47 263 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 SFT2D1Q8WV19 159 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 RNF133Q8WVZ7 376 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 ZNF845Q96IR2 970 aaPredicted RBP7.59□□□□□ -1.19
USP40-203ENST00000427112 CMTM3Q96MX0 182 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 ZNF442Q9H7R0 627 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 SLC2A8Q9NY64 477 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 B3GAT1Q9P2W7 334 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 IL36RNQ9UBH0 155 aa7.59□□□□□ -1.19
USP40-203ENST00000427112 SPTAN1Q13813 2472 aaKnown RBP7.59□□□□□ -1.2
USP40-203ENST00000427112 LIPT2A6NK58 231 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms