RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 PHOSPHO2Q8TCD6 241 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 MARCH1Q8TCQ1 289 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ASZ1Q8WWH4 475 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 GTF2H4Q92759 462 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 IMMP1LQ96LU5 166 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR52E6Q96RD3 313 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 HBEGFQ99075 208 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 P2RX4Q99571 388 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CIB1Q99828 191 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 RASL11BQ9BPW5 248 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CHID1Q9BWS9 393 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 MRPS26Q9BYN8 205 aaKnown RBP3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 ANKRD60Q9BZ19 345 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 DPY30Q9C005 99 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CLMPQ9H6B4 373 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 NTN4Q9HB63 628 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 MTCH1Q9NZJ7 389 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 VAPAQ9P0L0 249 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 CD84Q9UIB8 345 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 AP3M1Q9Y2T2 418 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 POLR3HQ9Y535 204 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 MMP24Q9Y5R2 645 aa3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 PHF3Q92576 2039 aaKnown RBP3.39□□□□□ -1.87
HMGB3P18-201ENST00000406327 A0A096LPI6 279 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 SLC5A10A0PJK1 596 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 C5orf67F2Z3F1 127 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 M0R3G1 203 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 TPST1O60507 370 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 PSIP1O75475 530 aaKnown RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 SCELO95171 688 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 CTSLP07711 333 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 TDGF1P13385 188 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 PRKACAP17612 351 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 PRPS1L1P21108 318 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 MSR1P21757 451 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 S100A3P33764 101 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 AQP2P41181 271 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 CDKN1BP46527 198 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 RPS5P46782 204 aaKnown RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 GZMMP51124 257 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 TDGF1P3P51864 188 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 NUP107P57740 925 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 MTPNP58546 118 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 PFN3P60673 137 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 LYZP61626 148 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 APOFQ13790 326 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZBED5Q49AG3 693 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 HENMT1Q5T8I9 393 aaKnown RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 CTRB2Q6GPI1 263 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 MSRB3Q8IXL7 192 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 FAM9CQ8IZT9 166 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 TMEM61Q8N0U2 210 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 KRTCAP2Q8N6L1 136 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR4F15Q8NGB8 312 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR52E4Q8NGH9 312 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 OR10A6Q8NH74 314 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 LYPD6BQ8NI32 183 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 ITFG1Q8TB96 612 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 SKA2Q8WVK7 121 aaPredicted RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 GEMIN6Q8WXD5 167 aaKnown RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 POP5Q969H6 163 aaKnown RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 TESCQ96BS2 214 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZNF707Q96C28 371 aaPredicted RBP3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 SLC35E1Q96K37 410 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 RNF145Q96MT1 663 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 CCDC115Q96NT0 180 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 CCL28Q9NRJ3 127 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 SLC25A37Q9NYZ2 338 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 TP53TG3Q9ULZ0 132 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 SLC22A14Q9Y267 594 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 VWA8A3KMH1 1905 aa3.38□□□□□ -1.87
HMGB3P18-201ENST00000406327 DNAH12Q6ZR08 3092 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 GJE1A6NN92 205 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 ZNF726A6NNF4 738 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 PSMD11O00231 422 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 UPK1AO00322 258 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 KPNA3O00505 521 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 CXCR6O00574 342 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 PEX7O00628 323 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 EIF4E2O60573 245 aaKnown RBP3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 CCNB2O95067 398 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 IGLV1-47P01700 117 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 CATP04040 527 aaKnown RBP3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 SERPINA5P05154 406 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 RETP07949 1114 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 GNAO1P09471 354 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 SMIM10L1P0DMW3 83 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 IL1RNP18510 177 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 RPS9P46781 194 aaKnown RBP3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 PRLHRP49683 370 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 CLDN18P56856 261 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 STXBP1P61764 594 aaKnown RBP3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 RAB11AP62491 216 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 IRF8Q02556 426 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 AQP6Q13520 282 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 NCF4Q15080 339 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 PON2Q15165 354 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 RAB11BQ15907 218 aa3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 HNRNPA1L2Q32P51 320 aaKnown RBP3.37□□□□□ -1.87
HMGB3P18-201ENST00000406327 RFX4Q33E94 735 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms