RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 POC1AQ8NBT0 407 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 ZNRF1Q8ND25 227 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 C8orf46Q8TAG6 207 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 H1FXQ92522 213 aaKnown RBP15.13■□□□□ 0.01
CLN3-202ENST00000355477 SLC25A28Q96A46 364 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 C9orf16Q9BUW7 83 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 ZMAT3Q9HA38 289 aaKnown RBP15.13■□□□□ 0.01
CLN3-202ENST00000355477 ELL3Q9HB65 397 aaPredicted RBP15.13■□□□□ 0.01
CLN3-202ENST00000355477 RASL12Q9NYN1 266 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 GMPPBQ9Y5P6 360 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 DSCAML1Q8TD84 2053 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 ANKRD61A6NGH8 418 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 J3QT63 122 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 PGA5P0DJD9 388 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 NDUFB7P17568 137 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 DLX1P56177 255 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 OR12D2P58182 307 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 UBE2V2Q15819 145 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 AWAT1Q58HT5 328 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 MEDAGQ5VYS4 303 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 Q6YL49 198 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 ZBTB49Q6ZSB9 765 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 ANGPTL5Q86XS5 388 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 ZNF573Q86YE8 665 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 CALHM1Q8IU99 346 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 BATF2Q8N1L9 274 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 CD177Q8N6Q3 437 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 TRMT10AQ8TBZ6 339 aaKnown RBP15.12■□□□□ 0.01
CLN3-202ENST00000355477 GATAD2BQ8WXI9 593 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 ZDHHC16Q969W1 377 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 DMRTB1Q96MA1 342 aa15.12■□□□□ 0.01
CLN3-202ENST00000355477 EXOGQ9Y2C4 368 aaKnown RBP15.12■□□□□ 0.01
CLN3-202ENST00000355477 DAPL1A0PJW8 107 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 RFPL4AA6NLU0 287 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 RFPL4AL1F8VTS6 287 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 NOS1APO75052 506 aaPredicted RBP15.11■□□□□ 0.01
CLN3-202ENST00000355477 CAV3P56539 151 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 FAM220AQ7Z4H9 259 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 ENTHD1Q8IYW4 607 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 PIP4P2Q8N4L2 257 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 C3orf56Q8N813 242 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 OR2G2Q8NGZ5 317 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 NPRL2Q8WTW4 380 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 LGALS12Q96DT0 336 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 SDSLQ96GA7 329 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 NRIP2Q9BQI9 281 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 SIRT7Q9NRC8 400 aa15.11■□□□□ 0.01
CLN3-202ENST00000355477 IGKV1-27A0A075B6S5 117 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 LOC107986453A0A1B0GWG9 222 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 FAM230AA0A1W2PPH8 454 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 MPZP25189 248 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 CEBPDP49716 269 aaPredicted RBP15.1■□□□□ 0.01
CLN3-202ENST00000355477 NANOS3P60323 173 aaKnown RBP15.1■□□□□ 0.01
CLN3-202ENST00000355477 ACTC1P68032 377 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 ACTA1P68133 377 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 SMIM21Q3B7S5 101 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 KIR3DL3Q8N743 410 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 TMEM185AQ8NFB2 350 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 RHOXF1Q8NHV9 184 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 ADI1Q9BV57 179 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 PLEKHA1Q9HB21 404 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 NOX4Q9NPH5 578 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 TNFRSF19Q9NS68 423 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 FAM118AQ9NWS6 357 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 FRRS1LQ9P0K9 344 aa15.1■□□□□ 0.01
CLN3-202ENST00000355477 A0A0U1RQK1 487 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 LOC100130705A0A1B0GUX0 176 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 RNASEK-C17orf49H0YIS7 233 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 SLC16A6O15403 523 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 NXPH2O95156 264 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 BAG2O95816 211 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 MELTFP08582 738 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 UBCP0CG48 685 aaKnown RBP15.09■□□□□ 0.01
CLN3-202ENST00000355477 PRDX2P32119 198 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 FDX2Q6P4F2 183 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 C16orf87Q6PH81 154 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 KCTD20Q7Z5Y7 419 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 CMTM4Q8IZR5 234 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 ACBD7Q8N6N7 88 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 TNFRSF14Q92956 283 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 HES4Q9HCC6 221 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 AMBNQ9NP70 447 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 SLC7A11Q9UPY5 501 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 MYRFQ9Y2G1 1151 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 POLDIP2Q9Y2S7 368 aa15.09■□□□□ 0.01
CLN3-202ENST00000355477 F8VVB4 439 aa15.08■□□□□ 0
CLN3-202ENST00000355477 F8VWA3 439 aa15.08■□□□□ 0
CLN3-202ENST00000355477 J3QLW9 94 aa15.08■□□□□ 0
CLN3-202ENST00000355477 DBTP11182 482 aaKnown RBP15.08■□□□□ 0
CLN3-202ENST00000355477 ZNF19P17023 458 aa15.08■□□□□ 0
CLN3-202ENST00000355477 ERVK11-1P61568 191 aa15.08■□□□□ 0
CLN3-202ENST00000355477 ZNF91Q05481 1191 aa15.08■□□□□ 0
CLN3-202ENST00000355477 FOXL1Q12952 345 aa15.08■□□□□ 0
CLN3-202ENST00000355477 IL24Q13007 206 aa15.08■□□□□ 0
CLN3-202ENST00000355477 KLRD1Q13241 179 aa15.08■□□□□ 0
CLN3-202ENST00000355477 METAP1DQ6UB28 335 aaPredicted RBP15.08■□□□□ 0
CLN3-202ENST00000355477 LHFPL3Q86UP9 236 aa15.08■□□□□ 0
CLN3-202ENST00000355477 CCDC54Q8NEL0 328 aa15.08■□□□□ 0
CLN3-202ENST00000355477 ADAT3Q96EY9 351 aaPredicted RBP15.08■□□□□ 0
CLN3-202ENST00000355477 PELI1Q96FA3 418 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms