RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 IL1F10Q8WWZ1 152 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TBX15Q96SF7 602 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 COMMD5Q9GZQ3 224 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 IER3IP1Q9Y5U9 82 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 LINC01387J3KSC0 135 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 GPNMBQ14956 572 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SPATA45Q537H7 98 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ACOT4Q8N9L9 421 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PTPMT1Q8WUK0 201 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TCTN2Q96GX1 697 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MSLNLQ96KJ4 702 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ST20Q9HBF5 79 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 BARX1Q9HBU1 254 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 EMC9Q9Y3B6 208 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RER1O15258 196 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ADAM20O43506 726 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SMPD2O60906 423 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SDC1P18827 310 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CASP6P55212 293 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RPS20P60866 119 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PYCR3Q53H96 274 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL24Q96A35 216 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PDCD1LG2Q9BQ51 273 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 STRADBQ9C0K7 418 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CNIH4Q9P003 139 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SP9P0CG40 484 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CDKN2DP55273 166 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 EIF3IQ13347 325 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 BOD1L2Q8IYS8 172 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 PIMREGQ9BSJ6 248 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 HMX2A2RU54 273 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 APCSP02743 223 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SNRPBP14678 240 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RAD52P43351 418 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 OR1Q1Q15612 314 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 FAM98CQ17RN3 349 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 Q6AWC8 147 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RANBP10Q6VN20 620 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 OLIG3Q7RTU3 272 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RGP1Q92546 391 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 OR8B4Q96RC9 309 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM147Q9BVK8 224 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 COX11Q9Y6N1 276 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 C11orf94C9JXX5 98 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RACK1P63244 317 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 EDDM3AQ14507 147 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 GABRA6Q16445 453 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM123Q8N131 208 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 RPEQ96AT9 228 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MRGPRX4Q96LA9 322 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 DEFB126Q9BYW3 111 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 EGLN1Q9GZT9 426 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SPATA6Q9NWH7 488 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 DSPPQ9NZW4 1301 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CTXND1A0A1B0GTU2 59 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 A0A1B0GU03 582 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 IFITM10A6NMD0 228 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CTSDP07339 412 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MEF2CQ06413 473 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SLC16A13Q7RTY0 426 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 OR52B4Q8NGK2 314 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 LPAR4Q99677 370 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 SH3BGRL3Q9H299 93 aa4.38□□□□□ -1.71
CSMD3-201ENST00000297405 ATXN7L1Q9ULK2 861 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL42Q9Y6G3 142 aaKnown RBP4.38□□□□□ -1.71
CSMD3-201ENST00000297405 CXorf51AA0A1B0GTR3 108 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ARG1P05089 322 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ALOX5APP20292 161 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 SNU13P55769 128 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 RPS23P62266 143 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF611Q8N823 705 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 C2orf88Q9BSF0 95 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GABRQQ9UN88 632 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 RCL1Q9Y2P8 373 aaKnown RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZFP37Q9Y6Q3 630 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 AQP7P3A6NL99 342 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 IQCF5A8MTL0 148 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 C1QTNF9BB2RNN3 333 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF217O75362 1048 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GPANK1O95872 356 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 DMRTA1Q5VZB9 504 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GATSQ8NAP1 163 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 NUBPLQ8TB37 319 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 C5orf30Q96GV9 206 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 IGSF5Q9NSI5 407 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM242Q9NWH2 141 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 MTCH2Q9Y6C9 303 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 PITX3O75364 302 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CA1P00915 261 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 P04436 131 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 EDN1P05305 212 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 CTSSP25774 331 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 VIPR2P41587 438 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 XCR1P46094 333 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 C1orf174Q8IYL3 243 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 FBXO27Q8NI29 283 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 ZBTB45Q96K62 511 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-201ENST00000297405 FZD8Q9H461 694 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM8BA6NDV4 472 aa4.37□□□□□ -1.71
CSMD3-201ENST00000297405 GFRA2O00451 464 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms