RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MKRN2OSH3BPM6 223 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 hCG_2039718K7EN88 272 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 GATCO43716 136 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 ENSAO43768 121 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 DPM1O60762 260 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RDH16O75452 317 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 TRAPPC6AO75865 159 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 UTS2O95399 124 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 SNAP29O95721 258 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 BCHEP06276 602 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 OR56A5P0C7T3 313 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CT45A6P0DMU7 189 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CT45A5P0DMU8 189 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CT45A7P0DMV0 189 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CTRB1P17538 263 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RAB5AP20339 215 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 DTYMKP23919 212 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 MSNP26038 577 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 OR1E1P30953 314 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 MAS1LP35410 378 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 ARL2P36404 184 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CDKN2CP42773 168 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RAB7AP51149 207 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 XKP51811 444 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 EMP2P54851 167 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 OR2B8PP59922 312 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 UBE2NP61088 152 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 ATP6V0D1P61421 351 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 VBP1P61758 197 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 SARNPP82979 210 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 SP4Q02446 784 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 ST3GAL4Q11206 333 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 SLAMF1Q13291 335 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 SNRNP35Q16560 246 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 C5orf64Q2M2E5 130 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RPEL1Q2QD12 228 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 NDUFAF6Q330K2 333 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 BSXQ3C1V8 233 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 ORMDL2Q53FV1 153 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CT45A1Q5HYN5 189 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CDKL4Q5MAI5 379 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RBM48Q5RL73 367 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 IDNKQ5T6J7 187 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 MFSD14CQ5VZR4 134 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 FAHD1Q6P587 224 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CLEC18BQ6UXF7 455 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 MBOAT1Q6ZNC8 495 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 Q6ZSR3 168 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 PAGE2Q7Z2X7 111 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 MRPL55Q7Z7F7 128 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 TMEM150AQ86TG1 271 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 METTL13Q8N6R0 699 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 PRELID2Q8N945 189 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CYB561A3Q8NBI2 242 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 ZNF738Q8NE65 137 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 OR56A4Q8NGH8 313 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CT45A3Q8NHU0 189 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 COQ8AQ8NI60 647 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 UBA3Q8TBC4 463 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 DOK4Q8TEW6 326 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 TFGQ92734 400 aaPredicted RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 CCDC127Q96BQ5 260 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 L3HYPDHQ96EM0 354 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CPB2Q96IY4 423 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 COL21A1Q96P44 957 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RBBP8Q99708 897 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 NAA50Q9GZZ1 169 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 DSN1Q9H410 356 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 WDR55Q9H6Y2 383 aaPredicted RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 CWH43Q9H720 699 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 TMBIM4Q9HC24 238 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 PRSS16Q9NQE7 514 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 SPANXB1Q9NS25 103 aaPredicted RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 CLN6Q9NWW5 311 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 C1orf109Q9NX04 203 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CLEC2DQ9UHP7 191 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 ENOPH1Q9UHY7 261 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 NAGKQ9UJ70 344 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 NXT1Q9UKK6 140 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 CFL2Q9Y281 166 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 RCL1Q9Y2P8 373 aaKnown RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 PPIL1Q9Y3C6 166 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 POLR3HQ9Y535 204 aaPredicted RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 TSSC4Q9Y5U2 329 aaPredicted RBP1.52□□□□□ -2.17
CD44-239ENST00000639002 ANKRD12Q6UB98 2062 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 MROH7Q68CQ1 1323 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 MYO18BQ8IUG5 2567 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TRAV8-7A0A075B6U6 113 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 A0A1B0GW55 424 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 ANKRD20A5PA0PJZ0 165 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 OR6C70A6NIJ9 312 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 GOLGA8KD6RF30 607 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 SMLR1H3BR10 107 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 GOLGA8MH3BSY2 632 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 CLDN34H7C241 214 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 M0R036 132 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 SLC9A3R1O14745 358 aaPredicted RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 MRPS12O15235 138 aaKnown RBP1.51□□□□□ -2.17
CD44-239ENST00000639002 SLC16A4O15374 487 aa1.51□□□□□ -2.17
CD44-239ENST00000639002 TOX3O15405 576 aaPredicted RBP1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms