RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PRRC2AP48634 2157 aaKnown RBP12.63□□□□□ -0.39
NUP54-213ENST00000513352 TRAV8-7A0A075B6U6 113 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 ISPDA4D126 451 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 TRIM64CA6NLI5 447 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 IFNL4K9M1U5 179 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 CDIPTO14735 213 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 RP2O75695 350 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 MAS1P04201 325 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 CD36P16671 472 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 FSTP19883 344 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 GATA4P43694 442 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 GPR6P46095 362 aaPredicted RBP12.63□□□□□ -0.39
NUP54-213ENST00000513352 RBP2P50120 134 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 MTCP1P56278 107 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 DSCR9P59020 149 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 HSD17B12Q53GQ0 312 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 SHEQ5VZ18 495 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 PEG10Q86TG7 708 aaKnown RBP12.63□□□□□ -0.39
NUP54-213ENST00000513352 ANGPTL5Q86XS5 388 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 C1orf87Q8N0U7 546 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 SCCPDHQ8NBX0 429 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 OR51A2Q8NGJ7 313 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 LRRC29Q8WV35 223 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 ERGIC1Q969X5 290 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 TIMD4Q96H15 378 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 Q96MF0 132 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 GPER1Q99527 375 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 SLITRK2Q9H156 845 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 OR51I2Q9H344 312 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 RNF7Q9UBF6 113 aa12.63□□□□□ -0.39
NUP54-213ENST00000513352 J3QT63 122 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 PIN1P1O15428 100 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 ARL6IP5O75915 188 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 JUNBP17275 347 aaPredicted RBP12.62□□□□□ -0.39
NUP54-213ENST00000513352 BDKRB2P30411 391 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 PMELP40967 661 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 AVPI1Q5T686 147 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 DDI2Q5TDH0 399 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 UNQ9370/PRO34162Q6UXP9 181 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 TMEM91Q6ZNR0 172 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 DNAAF1Q8NEP3 725 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 OR5D18Q8NGL1 313 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 CPNE2Q96FN4 548 aaPredicted RBP12.62□□□□□ -0.39
NUP54-213ENST00000513352 NARFLQ9H6Q4 476 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 METTL17Q9H7H0 456 aaPredicted RBP12.62□□□□□ -0.39
NUP54-213ENST00000513352 TMEM138Q9NPI0 162 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 STUB1Q9UNE7 303 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 SSR3Q9UNL2 185 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 FOXJ3Q9UPW0 622 aa12.62□□□□□ -0.39
NUP54-213ENST00000513352 IGKV1-27A0A075B6S5 117 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 IGHV4-30-2A0A087WSY4 118 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 LOC100506127A0A0U1RQW1 187 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 TMEM178BH3BS89 294 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 ZNF205O95201 554 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 PTBP3O95758 552 aaKnown RBP12.61□□□□□ -0.39
NUP54-213ENST00000513352 CYB5AP00167 134 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 UCHL1P09936 223 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 IGFBP3P17936 291 aaPredicted RBP12.61□□□□□ -0.39
NUP54-213ENST00000513352 GADD45AP24522 165 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 MYL9P24844 172 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 CALRP27797 417 aaKnown RBP12.61□□□□□ -0.39
NUP54-213ENST00000513352 CD80P33681 288 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 FAM201AQ5SY85 155 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 C22orf42Q6IC83 251 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 ASPHD2Q6ICH7 369 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 PRSS57Q6UWY2 283 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 WDR82Q6UXN9 313 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 BATF2Q8N1L9 274 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 OR52N4Q8NGI2 321 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 ZNF671Q8TAW3 534 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 Q8TCH9 128 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 C10orf105Q8TEF2 133 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 AQP3Q92482 292 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 RAB1CQ92928 201 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 NKX3-1Q99801 234 aaPredicted RBP12.61□□□□□ -0.39
NUP54-213ENST00000513352 CHCHD6Q9BRQ6 235 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 BPESC1Q9GZL8 116 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 FAM192AQ9GZU8 254 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 TLNRD1Q9H1K6 362 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 OR51E2Q9H255 320 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 SCOCQ9UIL1 159 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 POLDIP2Q9Y2S7 368 aa12.61□□□□□ -0.39
NUP54-213ENST00000513352 TRDV1A0A1B0GX56 115 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 NDUFS8O00217 210 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 AKR7A2O43488 359 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 SPRY1O43609 319 aaPredicted RBP12.6□□□□□ -0.39
NUP54-213ENST00000513352 SYNGR1O43759 233 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 RHBDL1O75783 438 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 SC5DO75845 299 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 ALX3O95076 343 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 TMEM225BP0DP42 221 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 TMEM33P57088 247 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 HOXA4Q00056 320 aaPredicted RBP12.6□□□□□ -0.39
NUP54-213ENST00000513352 KISS1Q15726 138 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 ZNF181Q2M3W8 571 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 FAM76BQ5HYJ3 339 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 ZNF529Q6P280 563 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 SLC25A26Q70HW3 274 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 CALHM1Q8IU99 346 aa12.6□□□□□ -0.39
NUP54-213ENST00000513352 KRTAP1-3Q8IUG1 177 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms