RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 Q6ZSR3 168 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 CATSPERDQ86XM0 798 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 ANGPTL6Q8NI99 470 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 TRUB1Q8WWH5 349 aaKnown RBP15.18■□□□□ 0.02
CLN3-202ENST00000355477 AQP3Q92482 292 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 RORBQ92753 470 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 RFKQ969G6 155 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 ORC6Q9Y5N6 252 aa15.18■□□□□ 0.02
CLN3-202ENST00000355477 CENPVL3A0A0U1RRI6 287 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 OR5B21A6NL26 309 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 H3BSH0 61 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 NDUFB3O43676 98 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 GLRA1P23415 457 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 ATP6V1E1P36543 226 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 MTNR1AP48039 350 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 SLC9A3R2Q15599 337 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 DEFB112Q30KQ8 113 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 CLVS2Q5SYC1 327 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 GPR157Q5UAW9 335 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 ZNF788Q6ZQV5 615 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 LY6G5BQ8NDX9 201 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 RNF166Q96A37 237 aaPredicted RBP15.17■□□□□ 0.02
CLN3-202ENST00000355477 GAFA1Q96PS6 74 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 MBOAT4Q96T53 435 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 SLC29A1Q99808 456 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 DNTTIP1Q9H147 329 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 CNTD2Q9H8S5 307 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 S100A14Q9HCY8 104 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 GPR173Q9NS66 373 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 IMPAD1Q9NX62 359 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 AASSQ9UDR5 926 aa15.17■□□□□ 0.02
CLN3-202ENST00000355477 IGKV1D-17A0A075B6S4 117 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 OR2AT4A6NND4 320 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 HAX1O00165 279 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 SULT1C4O75897 302 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 CCL1P22362 96 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 CFPP27918 469 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 SNRPGP62308 76 aaKnown RBP15.16■□□□□ 0.02
CLN3-202ENST00000355477 DGUOKQ16854 277 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 TP53I3Q53FA7 332 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 LRRC10Q5BKY1 277 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 SLC25A30Q5SVS4 291 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 METTL11BQ5VVY1 283 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 HAGHLQ6PII5 290 aaPredicted RBP15.16■□□□□ 0.02
CLN3-202ENST00000355477 PRSS35Q8N3Z0 413 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 ZNF671Q8TAW3 534 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 ZNF488Q96MN9 340 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 NLKQ9UBE8 527 aa15.16■□□□□ 0.02
CLN3-202ENST00000355477 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.16■□□□□ 0.02
CLN3-202ENST00000355477 J3QRE1 110 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 DLGAP1O14490 977 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 SYNGR1O43759 233 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 ACAA1P09110 424 aaPredicted RBP15.15■□□□□ 0.02
CLN3-202ENST00000355477 PSG2P11465 335 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 GABRA2P47869 451 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 ISL1P61371 349 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 LHX4Q969G2 390 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 TMIGD2Q96BF3 282 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 RNFT2Q96EX2 444 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 MED30Q96HR3 178 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 DCTN5Q9BTE1 182 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 PRDM13Q9H4Q3 707 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 GNG8Q9UK08 70 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 ZNF222Q9UK12 451 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 PKD1L1Q8TDX9 2849 aa15.15■□□□□ 0.02
CLN3-202ENST00000355477 PQLC2LA1A4F0 135 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 NKX6-3A6NJ46 265 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 DHRS7CA6NNS2 312 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 CLDN34H7C241 214 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 GPR37O15354 613 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 SIGLEC5O15389 551 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 KIR3DL2P43630 455 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 HAAOP46952 286 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 BPIFB3P59826 476 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 IL13RA1P78552 427 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 PDCD1Q15116 288 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 OCLNQ16625 522 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 CDONQ4KMG0 1287 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 PDZD9Q8IXQ8 264 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 C10orf67Q8IYJ2 551 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 TAF15Q92804 592 aaKnown RBP eCLIP15.14■□□□□ 0.01
CLN3-202ENST00000355477 ACOXLQ9NUZ1 547 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 ONECUT1Q9UBC0 465 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 SLC25A10Q9UBX3 287 aaPredicted RBP15.14■□□□□ 0.01
CLN3-202ENST00000355477 MAB21L2Q9Y586 359 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 KPTNQ9Y664 436 aa15.14■□□□□ 0.01
CLN3-202ENST00000355477 IGHV1-69DA0A0B4J2H0 117 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 A0A1B0GVI7 797 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 HOXA3O43365 443 aaPredicted RBP15.13■□□□□ 0.01
CLN3-202ENST00000355477 SYT7O43581 403 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 IGHV1-69P01742 117 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 RNASE1P07998 156 aaKnown RBP15.13■□□□□ 0.01
CLN3-202ENST00000355477 HKR1P10072 659 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 GABRB1P18505 474 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 PRB3Q04118 309 aaPredicted RBP15.13■□□□□ 0.01
CLN3-202ENST00000355477 ACP7Q6ZNF0 438 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 VMO1Q7Z5L0 202 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 RDH10Q8IZV5 341 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 PQLC1Q8N2U9 271 aa15.13■□□□□ 0.01
CLN3-202ENST00000355477 Q8N7P7 452 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms