RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TMEM244Q5VVB8 128 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 TMEM42Q69YG0 159 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 Q71RC1 249 aaPredicted RBP9.96□□□□□ -0.82
VPS52-213ENST00000461743 TEX29Q8N6K0 151 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 OR52I1Q8NGK6 324 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 OR10Z1Q8NGY1 313 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 OR14K1Q8NGZ2 314 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 OR2G2Q8NGZ5 317 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 CNIH3Q8TBE1 160 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 FBLIM1Q8WUP2 373 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 HPSE2Q8WWQ2 592 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 TFAP2CQ92754 450 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 TMEM186Q96B77 213 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 HIST1H2AAQ96QV6 131 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 PLEKHA1Q9HB21 404 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 UFSP2Q9NUQ7 469 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 RHBDL2Q9NX52 303 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 ERVK13-1Q9NX77 482 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 CNOT2Q9NZN8 540 aaKnown RBP9.96□□□□□ -0.82
VPS52-213ENST00000461743 AASSQ9UDR5 926 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 MIOXQ9UGB7 285 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 PCDHB10Q9UN67 800 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 DIMT1Q9UNQ2 313 aaKnown RBP9.96□□□□□ -0.82
VPS52-213ENST00000461743 POLR3KQ9Y2Y1 108 aaPredicted RBP9.96□□□□□ -0.82
VPS52-213ENST00000461743 PPIAL4AQ9Y536 164 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 JMJD1CQ15652 2540 aa9.96□□□□□ -0.82
VPS52-213ENST00000461743 TRAV38-1A0A0B4J264 116 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 LOC107986453A0A1B0GWG9 222 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 EFCAB10A6NFE3 127 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 ZNF850A8MQ14 1090 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 CEACAM18A8MTB9 384 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 FAM157AC9JC47 383 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 LGALS8O00214 317 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 P2RY10O00398 339 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 SYT7O43581 403 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 NDUFA2O43678 99 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 CRLF1O75462 422 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 FOXH1O75593 365 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 GATBO75879 557 aaKnown RBP9.95□□□□□ -0.82
VPS52-213ENST00000461743 CLIC3O95833 236 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 TFAP2AP05549 437 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 CCDC159P0C7I6 412 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 FAHP16930 419 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 PMELP40967 661 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 GNG3P63215 75 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 CLVS2Q5SYC1 327 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 DCDC5Q6ZRR9 648 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 NLRC3Q7RTR2 1065 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 WDR86Q86TI4 376 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 PRSS35Q8N3Z0 413 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 OR5A2Q8NGI9 324 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 PP6455Q8WZ26 134 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 PIGCQ92535 297 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 C12orf43Q96C57 262 aaKnown RBP9.95□□□□□ -0.82
VPS52-213ENST00000461743 PELI1Q96FA3 418 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 C4orf36Q96KX1 117 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 ZNF649Q9BS31 505 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 AMBNQ9NP70 447 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 C1orf123Q9NWV4 160 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 MYRFQ9Y2G1 1151 aa9.95□□□□□ -0.82
VPS52-213ENST00000461743 CAB39Q9Y376 341 aaPredicted RBP9.95□□□□□ -0.82
VPS52-213ENST00000461743 EXOSC1Q9Y3B2 195 aaKnown RBP9.95□□□□□ -0.82
VPS52-213ENST00000461743 DSCAML1Q8TD84 2053 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 A0A0G2JMP0 313 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 A0A0X1KG70 313 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 hCG_1807616A0A1W2PRN6 198 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 OOEPA6NGQ2 149 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 TMEM212A6NML5 194 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 SRRM5B3KS81 715 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 J3QLI3 93 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 J3QLW9 94 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 NRASP01111 189 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 LHBP01229 141 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 GRPP07492 148 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 RPS2P15880 293 aaKnown RBP9.94□□□□□ -0.82
VPS52-213ENST00000461743 MUC1P15941 1255 aaPredicted RBP9.94□□□□□ -0.82
VPS52-213ENST00000461743 ZNF19P17023 458 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 MYL12AP19105 171 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 KIR3DL2P43630 455 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 TGM4P49221 684 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 NPY4RP50391 375 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 PSMD7P51665 324 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 OR12D2P58182 307 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 CBX3Q13185 183 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 SMN1Q16637 294 aaKnown RBP9.94□□□□□ -0.82
VPS52-213ENST00000461743 CHRFAM7AQ494W8 412 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 CCDC58Q4VC31 144 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 ESCO2Q56NI9 601 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 TEX36Q5VZQ5 186 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 PLCXD3Q63HM9 321 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 WDR82Q6UXN9 313 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 TMPRSS11AQ6ZMR5 421 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 GCSAMQ8N6F7 178 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 OR4M2Q8NGB6 313 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 OR8B3Q8NGG8 313 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 RNF166Q96A37 237 aaPredicted RBP9.94□□□□□ -0.82
VPS52-213ENST00000461743 NEIL1Q96FI4 390 aaPredicted RBP9.94□□□□□ -0.82
VPS52-213ENST00000461743 OR8B2Q96RD0 313 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 CHST5Q9GZS9 411 aa9.94□□□□□ -0.82
VPS52-213ENST00000461743 SHARPINQ9H0F6 387 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms