RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ZNF2Q9BSG1 426 aaPredicted RBP7.64□□□□□ -1.19
USP40-203ENST00000427112 RNF126Q9BV68 326 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 ADAM19Q9H013 955 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 S1PR5Q9H228 398 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 RHOFQ9HBH0 211 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP40-203ENST00000427112 PUS1Q9Y606 427 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP40-203ENST00000427112 A0A0D9SG52 128 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 A0A1B0GV90 55 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 A0A1W2PPE3 182 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 A6NLC8 198 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 LDOC1O95751 146 aaPredicted RBP7.64□□□□□ -1.19
USP40-203ENST00000427112 ZNF43P17038 809 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 S100PP25815 95 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 CRABP1P29762 137 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 AGTR1P30556 359 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 ZNF41P51814 821 aaPredicted RBP7.64□□□□□ -1.19
USP40-203ENST00000427112 F2RL1P55085 397 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 NDUFA6P56556 154 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 B2MP61769 119 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 YPEL5P62699 121 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 IZUMO4Q1ZYL8 232 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 AKR1C8PQ5T2L2 129 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 ZNF529Q6P280 563 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 ZNF440Q8IYI8 595 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 ZNF519Q8TB69 540 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 MRPL24Q96A35 216 aaKnown RBP7.64□□□□□ -1.19
USP40-203ENST00000427112 THOC3Q96J01 351 aaKnown RBP7.64□□□□□ -1.19
USP40-203ENST00000427112 PLEKHJ1Q9NW61 149 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 PLEK2Q9NYT0 353 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 MMP17Q9ULZ9 603 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 PIEZO2Q9H5I5 2752 aa7.64□□□□□ -1.19
USP40-203ENST00000427112 C5orf67F2Z3F1 127 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 GPR37O15354 613 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ONECUT2O95948 504 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SFTA3P0C7M3 94 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SRYQ05066 204 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 RIPPLY1Q0D2K3 151 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 PEA15Q15121 130 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SPIN3Q5JUX0 258 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 AVPI1Q5T686 147 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 GRINAQ7Z429 371 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 HSD17B13Q7Z5P4 300 aaPredicted RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 UEVLDQ8IX04 471 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 OR13G1Q8NGZ3 307 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ZDHHC12Q96GR4 267 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 RHOVQ96L33 236 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 CDC6Q99741 560 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SLC25A21Q9BQT8 299 aaPredicted RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 SULT4A1Q9BR01 284 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SH3BGRL3Q9H299 93 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 C1orf198Q9H425 327 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ZNF160Q9HCG1 818 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 MMP24Q9Y5R2 645 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 OR5K4A6NMS3 321 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 GUCA1AP43080 201 aaPredicted RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 NCMAPQ5T1S8 102 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 TMEM244Q5VVB8 128 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SHEQ5VZ18 495 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 SLC22A24Q8N4F4 322 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 PHYHIPQ92561 330 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ARL11Q969Q4 196 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ZNF385AQ96PM9 386 aaKnown RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 LPAR5Q9H1C0 372 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 GFOD1Q9NXC2 390 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 PIGLQ9Y2B2 252 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 LHFPL6Q9Y693 200 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 PKDREJQ9NTG1 2253 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ARFGEF3Q5TH69 2177 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 TLCD2A6NGC4 264 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 FRG2CA6NGY1 282 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 DHRS7CA6NNS2 312 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 CDRT15L2A8MXV6 281 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 PHOX2AO14813 284 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 TPT1P13693 172 aaKnown RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 MECP2P51608 486 aaKnown RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 AFF3P51826 1226 aaKnown RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 ZNF813Q6ZN06 617 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 TERB2Q8NHR7 220 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 NEK7Q8TDX7 302 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ERGIC1Q969X5 290 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 TMEM230Q96A57 120 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 RBMXL1Q96E39 390 aaKnown RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 PIK3IP1Q96FE7 263 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 ALKBH3Q96Q83 286 aaPredicted RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 GPX7Q96SL4 187 aaPredicted RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 NAA11Q9BSU3 229 aaPredicted RBP7.63□□□□□ -1.19
USP40-203ENST00000427112 ABHD14AQ9BUJ0 271 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 FAM117AQ9C073 453 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 TAF9BQ9HBM6 251 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 RAB22AQ9UL26 194 aa7.63□□□□□ -1.19
USP40-203ENST00000427112 A0A1W2PPH5 198 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 TSTD3H0UI37 97 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 EIF4E2O60573 245 aaKnown RBP7.62□□□□□ -1.19
USP40-203ENST00000427112 IGKV3-11P04433 115 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 EPHA1P21709 976 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 HSD11B2P80365 405 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 SLC25A42Q86VD7 318 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 GKN2Q86XP6 184 aa7.62□□□□□ -1.19
USP40-203ENST00000427112 FAM24BQ8N5W8 94 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms