RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ZNF320A2RRD8 509 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 ACOT6Q3I5F7 207 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-201ENST00000359947 TOR2AQ5JU69 321 aa13.94□□□□□ -0.18
PTPRF-201ENST00000359947 SIAEQ9HAT2 523 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 BOLA1Q9Y3E2 137 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 UNC13CQ8NB66 2214 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 IGHV5-10-1A0A0J9YXX1 117 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 TCAPO15273 167 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 PRICKLE4Q2TBC4 344 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 BCL2L10Q9HD36 194 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 UBE2L5PA0A1B0GUS4 154 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 HPP00738 406 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 PTPMT1Q8WUK0 201 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-201ENST00000359947 SCN7AQ01118 1682 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 FAM58AQ8N1B3 248 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 RAB1CQ92928 201 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 RBM14Q96PK6 669 aaKnown RBP13.93□□□□□ -0.18
PTPRF-201ENST00000359947 DBX1A6NMT0 343 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 NTF3P20783 257 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 NDUFB11Q9NX14 153 aa13.93□□□□□ -0.18
PTPRF-201ENST00000359947 AKR7A2O43488 359 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 DUS3LQ96G46 650 aaKnown RBP13.92□□□□□ -0.18
PTPRF-201ENST00000359947 ACTR3CQ9C0K3 210 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-201ENST00000359947 CRISPLD2Q9H0B8 497 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 UGT2A1Q9Y4X1 527 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 SLC25A4P12235 298 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 GUCA2AQ02747 115 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 CDK5R1Q15078 307 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 STPG1Q5TH74 334 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 MFSD4AQ8N468 514 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 PTOV1Q86YD1 416 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 OR4S1Q8NGB4 309 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 DERL3Q96Q80 235 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 GAMTQ14353 236 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 KIAA1217Q5T5P2 1943 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 IFITM5A6NNB3 132 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 KLK8O60259 260 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 TJP1Q07157 1748 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 TUSC5Q8IXB3 177 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 OR52N4Q8NGI2 321 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 C4orf45Q96LM5 186 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 ST8SIA5O15466 376 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 RNF151Q2KHN1 245 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 PDZD11Q5EBL8 140 aa13.92□□□□□ -0.18
PTPRF-201ENST00000359947 BMI1P35226 326 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 GPX5O75715 221 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 MPZL1O95297 269 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 CYC1P08574 325 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 GABRG3Q99928 467 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 LRRC3CA6NJW4 275 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 WNT1P04628 370 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 APELAP0DMC3 54 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 PRRX1P54821 245 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 ZNF90Q03938 601 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 SP6Q3SY56 376 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 MRGPRDQ8TDS7 321 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 DOK1Q99704 481 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 ADGRL4Q9HBW9 690 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 NTN1O95631 604 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 EML2O95834 649 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 CT62P0C5K7 136 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 METTL15P1P0C7V9 234 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 RAE1P78406 368 aaKnown RBP13.91□□□□□ -0.18
PTPRF-201ENST00000359947 PXDC1Q5TGL8 231 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 GPX8Q8TED1 209 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 AUNIPQ9H7T9 357 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 OR2A5Q96R48 311 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 SLC35D1Q9NTN3 355 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 RRASP10301 218 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 ISL1P61371 349 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 Q3ZCU0 254 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 COL13A1Q5TAT6 717 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-201ENST00000359947 HSD17B10Q99714 261 aaKnown RBP13.91□□□□□ -0.18
PTPRF-201ENST00000359947 C20orf141Q9NUB4 165 aa13.91□□□□□ -0.18
PTPRF-201ENST00000359947 CYR61O00622 381 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 ZNF354AO60765 605 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-201ENST00000359947 GABRA1P14867 456 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 THBS4P35443 961 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 FOXL2P58012 376 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 SCPEP1Q9HB40 452 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 C11orf42Q8N5U0 333 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 BLNKQ8WV28 456 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 PIK3IP1Q96FE7 263 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 ADGRG7Q96K78 797 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 MRPS18BQ9Y676 258 aaKnown RBP13.9□□□□□ -0.18
PTPRF-201ENST00000359947 F5H697 171 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 J3KRW8 73 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 LIMK1P53667 647 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 JMJD6Q6NYC1 403 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-201ENST00000359947 RTN4IP1Q8WWV3 396 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-201ENST00000359947 LHX4Q969G2 390 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 TMEM231Q9H6L2 316 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 F2RL2O00254 374 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 MT-ND4LP03901 98 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 TMEM267Q0VDI3 215 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-201ENST00000359947 OR4Q3Q8NH05 313 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 OTOSQ8NHW6 89 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 COA4Q9NYJ1 87 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 CCDC88CQ9P219 2028 aa13.9□□□□□ -0.18
PTPRF-201ENST00000359947 H3F3AP84243 136 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms