RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 NPIPA1Q9UND3 350 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 IGLV1-36A0A0B4J1U3 117 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 A0A0J9YY10 115 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 C17orf105B2RV13 164 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 TGFBR3LH3BV60 316 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 CYB5BO43169 146 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 F10P00742 488 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 GAPDHP04406 335 aaKnown RBP11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 GSTP1P09211 210 aaKnown RBP11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 C4orf17Q53FE4 359 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF343Q6P1L6 599 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 ABHD12BQ7Z5M8 362 aaPredicted RBP11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 MRPL43Q8N983 215 aaKnown RBP11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 KCNG3Q8TAE7 436 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 LIPHQ8WWY8 451 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 TOMM40LQ969M1 308 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 MMABQ96EY8 250 aaPredicted RBP11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 C5orf34Q96MH7 638 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 RTBDNQ9BSG5 229 aaPredicted RBP11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 TXNIPQ9H3M7 391 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 SMOC1Q9H4F8 434 aa11.4□□□□□ -0.58
SFSWAP-209ENST00000540469 TERTO14746 1132 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 TNFSF14O43557 240 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 SOX15O60248 233 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 BCKDHBP21953 392 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 ASCL1P50553 236 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 ACY1Q03154 408 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 G6PC2Q9NQR9 355 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 RHBDD3Q9Y3P4 386 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 TRIOBPQ9H2D6 2365 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 SEC14L6B5MCN3 397 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 LYL1P12980 280 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 DDTP30046 118 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 PPP1CCP36873 323 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 TAS2R46P59540 309 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF239Q16600 458 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 VAX1Q5SQQ9 334 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 HLA-DQA1Q5Y7H0 255 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF776Q68DI1 518 aaPredicted RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 PLXDC2Q6UX71 529 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 AVL9Q8NBF6 648 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 OR51E1Q8TCB6 317 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 EMG1Q92979 244 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 NXF5Q9H1B4 397 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 LPAR5Q9H1C0 372 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 ASCC3Q8N3C0 2202 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 FIGNL2A6NMB9 653 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 OR3A4PP47883 348 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 GPM6BQ13491 265 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 SGCBQ16585 318 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 HAGHQ16775 308 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 C2orf27AQ580R0 203 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 OR2T2Q6IF00 324 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 HEPN1Q6WQI6 88 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 BEND4Q6ZU67 534 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 TGIF2LXQ8IUE1 241 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 MRPL24Q96A35 216 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 SH3BGRL3Q9H299 93 aa11.39□□□□□ -0.59
SFSWAP-209ENST00000540469 LOC390937A0A1W2PQ73 354 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 A8MVM7 634 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 QDPRP09417 244 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 ABCA11PQ4W5N1 156 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 PLAC9Q5JTB6 97 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 FAM78AQ5JUQ0 283 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 C1orf140Q5VVS0 124 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 GGNBP1Q5YKI7 109 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 SPNS3Q6ZMD2 512 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 NUP54Q7Z3B4 507 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 FLVCR1-AS1Q8TAF5 88 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF524Q96C55 264 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 MALSU1Q96EH3 234 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 CYYR1Q96J86 154 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 WDR92Q96MX6 357 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 RARRES2Q99969 163 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 PLEKHA2Q9HB19 425 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 CRLF2Q9HC73 371 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 PISDQ9UG56 409 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 RAMP1O60894 148 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 BGLAPP02818 100 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 HEXBP07686 556 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 BLVRBP30043 206 aaPredicted RBP11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 GPR3P46089 330 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF117Q03924 483 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 SP6Q3SY56 376 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 PBOV1Q9GZY1 135 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 FAM60AQ9NP50 221 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 ZDHHC8Q9ULC8 765 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 WASF3Q9UPY6 502 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 LINC01553A4QN01 128 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 ARGFXA6NJG6 315 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 SLC31A2O15432 143 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 DEDDO75618 318 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 DANCRP0C864 163 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 SLC6A8P48029 635 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 GFI1BQ5VTD9 330 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 RNF144BQ7Z419 303 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 P4HA3Q7Z4N8 544 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 YAF2Q8IY57 180 aa11.38□□□□□ -0.59
SFSWAP-209ENST00000540469 RCL1Q9Y2P8 373 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms