RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 KCNRGQ8N5I3 272 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 DEFB123Q8N688 67 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 OR1F12Q8NHA8 337 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 ARHGAP5-AS1Q96IT6 56 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 CDC6Q99741 560 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 FAM117AQ9C073 453 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 RGCCQ9H4X1 137 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 TMEM38BQ9NVV0 291 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 RDH8Q9NYR8 311 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 BOKQ9UMX3 212 aaPredicted RBP13.02□□□□□ -0.33
NUP54-217ENST00000514987 SESN1Q9Y6P5 492 aa13.02□□□□□ -0.33
NUP54-217ENST00000514987 hCG_1807616A0A1W2PRN6 198 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 LRRC3CA6NJW4 275 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 FOXI3A8MTJ6 420 aaPredicted RBP13.01□□□□□ -0.33
NUP54-217ENST00000514987 E9PLN8 166 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 STMND1H3BQB6 276 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 SYNGR3O43761 229 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 CRYZL1O95825 349 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 FAHP16930 419 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 AMY2BP19961 511 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 POU3F2P20265 443 aaPredicted RBP13.01□□□□□ -0.33
NUP54-217ENST00000514987 M6PRP20645 277 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 MPGP29372 298 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 ECI1P42126 302 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 OR3A2P47893 321 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 Q0VFX4 171 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 CNN3Q15417 329 aaKnown RBP13.01□□□□□ -0.33
NUP54-217ENST00000514987 C17orf107Q6ZR85 190 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 RAB11FIP2Q7L804 512 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 RNF144BQ7Z419 303 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 THAP6Q8TBB0 222 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 RBPMSQ93062 196 aaKnown RBP13.01□□□□□ -0.33
NUP54-217ENST00000514987 CPNE4Q96A23 557 aaPredicted RBP13.01□□□□□ -0.33
NUP54-217ENST00000514987 SGK3Q96BR1 496 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 LIN37Q96GY3 246 aaPredicted RBP13.01□□□□□ -0.33
NUP54-217ENST00000514987 ADGRG7Q96K78 797 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 P4HTMQ9NXG6 502 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 PFDN2Q9UHV9 154 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 TNFSF18Q9UNG2 199 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 GPR132Q9UNW8 380 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 TIMM10BQ9Y5J6 103 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 PRUNE2Q8WUY3 3088 aa13.01□□□□□ -0.33
NUP54-217ENST00000514987 COL27A1Q8IZC6 1860 aaPredicted RBP13□□□□□ -0.33
NUP54-217ENST00000514987 CCDC187A0A096LP49 1063 aa13□□□□□ -0.33
NUP54-217ENST00000514987 CXCL13O43927 109 aa13□□□□□ -0.33
NUP54-217ENST00000514987 JMJD7P0C870 316 aa13□□□□□ -0.33
NUP54-217ENST00000514987 AKR1C4P17516 323 aa13□□□□□ -0.33
NUP54-217ENST00000514987 VAMP1P23763 118 aa13□□□□□ -0.33
NUP54-217ENST00000514987 FPR2P25090 351 aa13□□□□□ -0.33
NUP54-217ENST00000514987 BLVRBP30043 206 aaPredicted RBP13□□□□□ -0.33
NUP54-217ENST00000514987 RPS18P62269 152 aaKnown RBP13□□□□□ -0.33
NUP54-217ENST00000514987 CAMK2BQ13554 666 aa13□□□□□ -0.33
NUP54-217ENST00000514987 SURF2Q15527 256 aaPredicted RBP13□□□□□ -0.33
NUP54-217ENST00000514987 KRTAP27-1Q3LI81 207 aa13□□□□□ -0.33
NUP54-217ENST00000514987 NRN1LQ496H8 165 aa13□□□□□ -0.33
NUP54-217ENST00000514987 SFRP5Q5T4F7 317 aa13□□□□□ -0.33
NUP54-217ENST00000514987 SULF2Q8IWU5 870 aa13□□□□□ -0.33
NUP54-217ENST00000514987 LRRC20Q8TCA0 184 aa13□□□□□ -0.33
NUP54-217ENST00000514987 MARCH1Q8TCQ1 289 aa13□□□□□ -0.33
NUP54-217ENST00000514987 ST8SIA4Q92187 359 aa13□□□□□ -0.33
NUP54-217ENST00000514987 GPR87Q9BY21 358 aa13□□□□□ -0.33
NUP54-217ENST00000514987 CRLF2Q9HC73 371 aa13□□□□□ -0.33
NUP54-217ENST00000514987 NUP50Q9UKX7 468 aa13□□□□□ -0.33
NUP54-217ENST00000514987 LOC100509620A0A075B734 347 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 A0A0G2JMM0 328 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 A0A1W2PPB8 328 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 KANTRA0A1W2PQU2 76 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 A0A1W2PRS3 328 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 OR6C6A6NF89 314 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 DBX1A6NMT0 343 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 KIR3DP1A8MWS1 328 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 CYTIPO60759 359 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 TRAPPC6AO75865 159 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 GDF1P27539 372 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 MPLP40238 635 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 STK11Q15831 433 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 C1QTNF12Q5T7M4 302 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 ZNF660Q6AZW8 331 aaPredicted RBP12.99□□□□□ -0.33
NUP54-217ENST00000514987 RGS7BPQ6MZT1 257 aaPredicted RBP12.99□□□□□ -0.33
NUP54-217ENST00000514987 ACOT7LQ6ZUV0 252 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 TIPARPQ7Z3E1 657 aaKnown RBP12.99□□□□□ -0.33
NUP54-217ENST00000514987 PDZD9Q8IXQ8 264 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 ZNF100Q8IYN0 542 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 OR5M9Q8NGP3 310 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 OR10D3Q8NH80 312 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 TMEM45BQ96B21 275 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 LOXL4Q96JB6 756 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 TECTBQ96PL2 329 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 PECRQ9BY49 303 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 SPRY4Q9C004 299 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 METTL9Q9H1A3 318 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 SLC25A32Q9H2D1 315 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 ABI3Q9P2A4 366 aa12.99□□□□□ -0.33
NUP54-217ENST00000514987 NCOA6Q14686 2063 aaPredicted RBP12.99□□□□□ -0.33
NUP54-217ENST00000514987 A0A1W2PP11 408 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 C5orf63A6NC05 138 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 C21orf140B9A014 251 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 RAD51DO75771 328 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 NMBP08949 121 aa12.98□□□□□ -0.33
NUP54-217ENST00000514987 ANOS1P23352 680 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms