RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CD1AP06126 327 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 TESK1Q15569 626 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 CEP78Q5JTW2 689 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 CLVS2Q5SYC1 327 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 TMEM42Q69YG0 159 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 LRRC75A-AS1Q8N1F1 130 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 ITLN1Q8WWA0 313 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 HPSE2Q8WWQ2 592 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 FGGYQ96C11 551 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 C10orf35Q96D05 121 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 CHST5Q9GZS9 411 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 ABCB9Q9NP78 766 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 IL19Q9UHD0 177 aa25.12■■□□□ 1.61
LIMCH1-211ENST00000509638 IGHV3-64DA0A0J9YX35 117 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 ANKRD61A6NGH8 418 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 NRASP01111 189 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 OCM2P0CE71 109 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 PSMB9P28065 219 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 SOX2P48431 317 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 RPS11P62280 158 aaKnown RBP eCLIP25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 TPBGQ13641 420 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 NEDD8Q15843 81 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 DMRTC1Q5HYR2 192 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 PLCXD3Q63HM9 321 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 MEGF10Q96KG7 1140 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 TMED9Q9BVK6 235 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 GPR173Q9NS66 373 aa25.11■■□□□ 1.61
LIMCH1-211ENST00000509638 CYSRT1A8MQ03 144 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 CPEP16870 476 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 SRP9P49458 86 aaKnown RBP25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 MAB21L1Q13394 359 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 KCTD8Q6ZWB6 473 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 PP6455Q8WZ26 134 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 SSX4O60224 188 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 INMTO95050 263 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 DAOP14920 347 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 CD200P41217 278 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 GPR50Q13585 617 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 ARMCX4Q5H9R4 360 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 SPERTQ8NA61 448 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 OR5P3Q8WZ94 311 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 TMEM106AQ96A25 262 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 CXXC4Q9H2H0 198 aa25.1■■□□□ 1.61
LIMCH1-211ENST00000509638 PRRC2AP48634 2157 aaKnown RBP25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 OTOGQ6ZRI0 2925 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 TRBV5-5A0A0J9YX44 114 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 MOB3CQ70IA8 216 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 PHC2Q8IXK0 858 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 OR14A2Q96R54 314 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 MICU1Q9BPX6 476 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 RTL8AQ9BWD3 113 aa25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 FGF23Q9GZV9 251 aaPredicted RBP25.09■■□□□ 1.61
LIMCH1-211ENST00000509638 DYSFO75923 2080 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 GATBO75879 557 aaKnown RBP25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 CD2P06729 351 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 TNFRSF1AP19438 455 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 CEACAM21Q3KPI0 293 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 Q499Y3 187 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 ZNF525Q8N782 197 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 HIST1H2AAQ96QV6 131 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 C14orf119Q9NWQ9 140 aa25.08■■□□□ 1.61
LIMCH1-211ENST00000509638 LOC100289279A0A1B0GTE1 492 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 CDC14BO60729 498 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 MZT1Q08AG7 82 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 SSX1Q16384 188 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 PRAMEF6Q5VXH4 476 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 WDR86Q86TI4 376 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 CELF2-AS1Q8N7Q2 184 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 FOXC2Q99958 501 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 VCX3AQ9NNX9 186 aa25.07■■□□□ 1.6
LIMCH1-211ENST00000509638 IGHV1-69-2A0A0G2JMI3 117 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 LYNX1G3V0Z9 82 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 SMIM18P0DKX4 95 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 LYNX1P0DP58 116 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 THBS2P35442 1172 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 GPM6AP51674 278 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 RPS25P62851 125 aaKnown RBP25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 UBE2V2Q15819 145 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 Q5PR19 223 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 PARP16Q8N5Y8 322 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 NPRL2Q8WTW4 380 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 TMEM203Q969S6 136 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 CACNG2Q9Y698 323 aa25.06■■□□□ 1.6
LIMCH1-211ENST00000509638 SERPINA3P01011 423 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 ART1P52961 327 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 HNRNPA0Q13151 305 aaKnown RBP25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 UTS2BQ765I0 119 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 MS4A15Q8N5U1 240 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 OR13C9Q8NGT0 318 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 MUL1Q969V5 352 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 RNF170Q96K19 258 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 TECTBQ96PL2 329 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 NDUFB11Q9NX14 153 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 TREM2Q9NZC2 230 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 TRIM64CA6NLI5 447 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 GATA4P43694 442 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 INSL4Q14641 139 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 CARTPTQ16568 116 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 MOGAT3Q86VF5 341 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 TGIF2LYQ8IUE0 185 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms