RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ATP1A1-AS1Q5TC04 95 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 JMJD6Q6NYC1 403 aaPredicted RBP14.29□□□□□ -0.12
COL4A1-204ENST00000543140 FGFBP3Q8TAT2 258 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 CPT1CQ8TCG5 803 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 CPNE4Q96A23 557 aaPredicted RBP14.29□□□□□ -0.12
COL4A1-204ENST00000543140 CDC6Q99741 560 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 FBLN5Q9UBX5 448 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 V9GYS6 101 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 GOSR2O14653 212 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 SYNGR3O43761 229 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 MELTFP08582 738 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 FCGR2AP12318 317 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 HRH1P35367 487 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 RAB35Q15286 201 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 CRIP3Q6Q6R5 217 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 IL22RA1Q8N6P7 574 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 OR13C8Q8NGS7 320 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 SSC4DQ8WTU2 575 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 RAB3CQ96E17 227 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 FOXB1Q99853 325 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 SLC6A15Q9H2J7 730 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 GIPP09681 153 aaPredicted RBP14.28□□□□□ -0.12
COL4A1-204ENST00000543140 CRYGSP22914 178 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 PTGFRP43088 359 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 PER3P56645 1201 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 ATPAF1Q5TC12 328 aaPredicted RBP14.28□□□□□ -0.12
COL4A1-204ENST00000543140 DCAF12L2Q5VW00 463 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 THOC7Q6I9Y2 204 aaKnown RBP14.28□□□□□ -0.12
COL4A1-204ENST00000543140 OR2W3Q7Z3T1 314 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 PNLDC1Q8NA58 520 aaKnown RBP14.28□□□□□ -0.12
COL4A1-204ENST00000543140 OR2AK2Q8NG84 335 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 OR1F12Q8NHA8 337 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 SLC25A21Q9BQT8 299 aaPredicted RBP14.28□□□□□ -0.12
COL4A1-204ENST00000543140 DPCDQ9BVM2 203 aaPredicted RBP14.28□□□□□ -0.12
COL4A1-204ENST00000543140 OR10A2Q9H208 303 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 GPR35Q9HC97 309 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF224Q9NZL3 707 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 ABI3Q9P2A4 366 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 UPB1Q9UBR1 384 aa14.28□□□□□ -0.12
COL4A1-204ENST00000543140 ERVH48-1M5A8F1 160 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 CYTIPO60759 359 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 OR2A4O95047 310 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 LCATP04180 440 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 TPOP07202 933 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 CST2P09228 141 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 OR4E1P0C645 316 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 THBS4P35443 961 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 TMEM50BP56557 158 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 GNG2P59768 71 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 OR2A7Q96R45 310 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 TTTY12Q9BZ98 90 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 HEXA-AS1Q9H8Q6 139 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 ELL3Q9HB65 397 aaPredicted RBP14.27□□□□□ -0.13
COL4A1-204ENST00000543140 RYDENQ9NUL5 291 aaKnown RBP14.27□□□□□ -0.13
COL4A1-204ENST00000543140 B4GALT7Q9UBV7 327 aa14.27□□□□□ -0.13
COL4A1-204ENST00000543140 OR14I1A6ND48 311 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 DISC1C4P0D8 188 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 APOC1P02654 83 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 PMP2P02689 132 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 CHRM2P08172 466 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF35P13682 527 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 SERPINA2P20848 420 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 ACKR3P25106 362 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 HTR5AP47898 357 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 RAP2BP61225 183 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 PSG4Q00888 419 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 C9orf135Q5VTT2 229 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 C11orf88Q6PI97 169 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF767PQ75MW2 155 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 SLC16A14Q7RTX9 510 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 SKA3Q8IX90 412 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 CDH26Q8IXH8 852 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 ARHGAP5-AS1Q96IT6 56 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 CHST5Q9GZS9 411 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 GPR173Q9NS66 373 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 DOCK7Q96N67 2140 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 PRRC2CQ9Y520 2896 aaKnown RBP14.26□□□□□ -0.13
COL4A1-204ENST00000543140 MTRF1O75570 445 aaKnown RBP14.26□□□□□ -0.13
COL4A1-204ENST00000543140 RAD51DO75771 328 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 SCGNO76038 276 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 PRF1P14222 555 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 LHX2P50458 406 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 MEF2DQ14814 521 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 TGIF1Q15583 401 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 TEX261Q6UWH6 196 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 DRAM2Q6UX65 266 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 OR52H1Q8NGJ2 320 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 OR51T1Q8NGJ9 327 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 REEP6Q96HR9 211 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF107Q9UII5 783 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-204ENST00000543140 VSIG4Q9Y279 399 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 NOSIPQ9Y314 301 aaKnown RBP14.26□□□□□ -0.13
COL4A1-204ENST00000543140 U3KQ87 197 aa14.26□□□□□ -0.13
COL4A1-204ENST00000543140 HIST1H1DP16402 221 aaKnown RBP14.25□□□□□ -0.13
COL4A1-204ENST00000543140 PLGLB1Q02325 96 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 SCRN3Q0VDG4 424 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 AIMP2Q13155 320 aaKnown RBP14.25□□□□□ -0.13
COL4A1-204ENST00000543140 TRIP6Q15654 476 aaKnown RBP14.25□□□□□ -0.13
COL4A1-204ENST00000543140 PDSS1Q5T2R2 415 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 ZBTB37Q5TC79 503 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms