RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 H2BFMP0C1H6 154 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 MDKP21741 143 aaPredicted RBP13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 GNALP38405 381 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 POU4F2Q12837 409 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 PDCD1Q15116 288 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 SNCBQ16143 134 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 MICBQ29980 383 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 WDR82Q6UXN9 313 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 BTN2A1Q7KYR7 527 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 ADGRG5Q8IZF4 528 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 TMEM86BQ8N661 226 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 CCDC197Q8NCU1 140 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 GATAD2BQ8WXI9 593 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 PGAM5Q96HS1 289 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 CLPTM1LQ96KA5 538 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 FAM71F1Q96KD3 344 aaPredicted RBP13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 C1orf21Q9H246 121 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 OR51V1Q9H2C8 321 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 RGCCQ9H4X1 137 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 TAS2R1Q9NYW7 299 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 MMP24Q9Y5R2 645 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 PRR23D1E9PI22 279 aaPredicted RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 FAM107AO95990 144 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 PRR23D2P0DMB1 279 aaPredicted RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 POU1F1P28069 291 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 NAA10P41227 235 aaPredicted RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 CSNK2BP67870 215 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 GINS1Q14691 196 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 GFOD2Q3B7J2 385 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 TMEM179BQ7Z7N9 219 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 FTMTQ8N4E7 242 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 ZNF454Q8N9F8 522 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 OTOSQ8NHW6 89 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 CANT1Q8WVQ1 401 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 ST8SIA4Q92187 359 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 MICU1Q9BPX6 476 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 PAPOLGQ9BWT3 736 aaKnown RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 TLNRD1Q9H1K6 362 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 PPP1R3EQ9H7J1 279 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 BRD7Q9NPI1 651 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 PDP1Q9P0J1 537 aaPredicted RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 RPUSD1Q9UJJ7 312 aaKnown RBP13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 RHBDD3Q9Y3P4 386 aa13.7□□□□□ -0.22
CCDC28B-204ENST00000469003 IGHV1-69DA0A0B4J2H0 117 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 A0A1B0GUS0 222 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 FAM181BA6NEQ2 426 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 AQP12BA6NM10 295 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 ANXA2P2A6NMY6 339 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 GNGT2O14610 69 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 IGHV1-69P01742 117 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 HMGN1P05114 100 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 LYNP07948 512 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 MELTFP08582 738 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 HOXB6P17509 224 aaKnown RBP13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 OMGP23515 440 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 ARF6P62330 175 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 IL5RAQ01344 420 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 WDR38Q5JTN6 314 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 PLBD1Q6P4A8 553 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 SLC36A1Q7Z2H8 476 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 AQP12AQ8IXF9 295 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 GALNT4Q8N4A0 578 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 THEM6Q8WUY1 208 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 LHX4Q969G2 390 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 C12orf43Q96C57 262 aaKnown RBP13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 ITPKCQ96DU7 683 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 CCL13Q99616 98 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 CNTD2Q9H8S5 307 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 ABCB9Q9NP78 766 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 TNFRSF19Q9NS68 423 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 ACOXLQ9NUZ1 547 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 MPC1Q9Y5U8 109 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 KPTNQ9Y664 436 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 POMT1Q9Y6A1 747 aa13.69□□□□□ -0.22
CCDC28B-204ENST00000469003 A0A1B0GW55 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 CDIPTO14735 213 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 PRODHO43272 600 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 SELENOFO60613 162 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 CRYBA1P05813 215 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L2P0CJ85 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L3P0CJ86 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L4P0CJ87 422 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L5P0CJ88 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L6P0CJ89 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L7P0CJ90 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 OSMP13725 252 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 ELF3P78545 371 aaPredicted RBP13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 PDLIM3Q53GG5 364 aaPredicted RBP13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4L9Q6RFH8 374 aaPredicted RBP13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 FIP1L1Q6UN15 594 aaKnown RBP13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 OR10Z1Q8NGY1 313 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DMRTB1Q96MA1 342 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 THTPAQ9BU02 230 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 RTL8AQ9BWD3 113 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 CHIAQ9BZP6 476 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 ZNF556Q9HAH1 456 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 DUX4Q9UBX2 424 aa13.68□□□□□ -0.22
CCDC28B-204ENST00000469003 TMEM210A6NLX4 147 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms