RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ZNF584Q8IVC4 421 aa13.64□□□□□ -0.23
CCDC40-202ENST00000374876 MUC20Q8N307 709 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-202ENST00000374876 ZFP62Q8NB50 900 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-202ENST00000374876 CCDC107Q8WV48 283 aa13.64□□□□□ -0.23
CCDC40-202ENST00000374876 SLC25A21Q9BQT8 299 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-202ENST00000374876 POFUT1Q9H488 388 aa13.64□□□□□ -0.23
CCDC40-202ENST00000374876 SLC5A6Q9Y289 635 aa13.64□□□□□ -0.23
CCDC40-202ENST00000374876 NBASA2RRP1 2371 aa13.64□□□□□ -0.23
CCDC40-202ENST00000374876 FAM166BA8MTA8 275 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 RFPL3SP0C7P2 107 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 DSCR4P56555 118 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 PLGLB1Q02325 96 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 FOXO1Q12778 655 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 GRK1Q15835 563 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 CHST4Q8NCG5 386 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 OR2AK2Q8NG84 335 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 OR8B12Q8NGG6 310 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 AQP3Q92482 292 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 TTTY12Q9BZ98 90 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 TINAGL1Q9GZM7 467 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 RYDENQ9NUL5 291 aaKnown RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 DKKL1Q9UK85 242 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 PLSCR5A0PG75 271 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 TMEM82A0PJX8 343 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 EIF1BO60739 113 aaKnown RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 SNAPC5O75971 98 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 MPC2O95563 127 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 MELTFP08582 738 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF93P35789 620 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 OR3A3P47888 321 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 CX3CR1P49238 355 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 UBE2MP61081 183 aaKnown RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 DHODHQ02127 395 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 UNC119Q13432 240 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 SGCAQ16586 387 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 AWAT2Q6E213 333 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF529Q6P280 563 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 PAQR4Q8N4S7 273 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 ELMOD3Q96FG2 381 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 ALX4Q9H161 411 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-202ENST00000374876 GPR84Q9NQS5 396 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 GLTPQ9NZD2 209 aa13.63□□□□□ -0.23
CCDC40-202ENST00000374876 SHANK1Q9Y566 2161 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 RAB27BO00194 218 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 GOSR2O14653 212 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 SCGNO76038 276 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 CRYABP02511 175 aaKnown RBP13.62□□□□□ -0.23
CCDC40-202ENST00000374876 VSIG8P0DPA2 414 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 ABOP16442 354 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF24P17028 368 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 CSNK1A1P48729 337 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 PPIAP62937 165 aaKnown RBP13.62□□□□□ -0.23
CCDC40-202ENST00000374876 GRB2P62993 217 aaKnown RBP13.62□□□□□ -0.23
CCDC40-202ENST00000374876 H3F3AP84243 136 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 EXOSC2Q13868 293 aaKnown RBP13.62□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF324BQ6AW86 544 aaPredicted RBP13.62□□□□□ -0.23
CCDC40-202ENST00000374876 C11orf88Q6PI97 169 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 TMED4Q7Z7H5 227 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 FJX1Q86VR8 437 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 ANGPTL5Q86XS5 388 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 BPIFB2Q8N4F0 458 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF283Q8N7M2 679 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 CMBLQ96DG6 245 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 CHST6Q9GZX3 395 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 DEFB127Q9H1M4 99 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 PNRC2Q9NPJ4 139 aaKnown RBP13.62□□□□□ -0.23
CCDC40-202ENST00000374876 UBQLN2Q9UHD9 624 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 RELNP78509 3460 aa13.62□□□□□ -0.23
CCDC40-202ENST00000374876 NPIPA2E9PIF3 369 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 F5H5P2 479 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 NPIPA3F8WFD2 350 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 L7N2F9 121 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 ZNHIT1O43257 154 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 SIX6O95475 246 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 CD74P04233 296 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 NFYAP23511 347 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-202ENST00000374876 H2BFSP57053 126 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 QRFPP83859 136 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 MEF2DQ14814 521 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 GFOD2Q3B7J2 385 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF260Q3ZCT1 412 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 CDNFQ49AH0 187 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 SCGB2B2Q4G0G5 96 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 FAM57BQ71RH2 274 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 PGAP1Q75T13 922 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 TRAPPC6BQ86SZ2 158 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF101Q8IZC7 436 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 WDR89Q96FK6 387 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-202ENST00000374876 FAM71F1Q96KD3 344 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-202ENST00000374876 NAA11Q9BSU3 229 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF416Q9BWM5 594 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 TMPRSS13Q9BYE2 586 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 OPN4Q9UHM6 478 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 NCKAP5O14513 1909 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 IGHV3-15A0A0B4J1V0 119 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 LRRC3CA6NJW4 275 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 DISC1C4P0D8 188 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 ZIC3O60481 467 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 VAMP5O95183 116 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 OR4E1P0C645 316 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms