RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 CCDC102BQ68D86 513 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 C15orf52Q6ZUT6 534 aaKnown RBP17.19■□□□□ 0.34
CLN3-242ENST00000635958 IRS2Q9Y4H2 1338 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 ATP2B4P23634 1241 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 ARID4AP29374 1257 aaPredicted RBP17.19■□□□□ 0.34
CLN3-242ENST00000635958 GPSM2P81274 684 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 C7orf43Q8WVR3 580 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 SPON1Q9HCB6 807 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 ANKIB1Q9P2G1 1089 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 CD2APQ9Y5K6 639 aa17.19■□□□□ 0.34
CLN3-242ENST00000635958 UQCRFS1P1P0C7P4 283 aa17.18■□□□□ 0.34
CLN3-242ENST00000635958 TTC39AQ5SRH9 613 aa17.18■□□□□ 0.34
CLN3-242ENST00000635958 PRPF40BQ6NWY9 871 aaKnown RBP17.18■□□□□ 0.34
CLN3-242ENST00000635958 FBXO33Q7Z6M2 555 aa17.18■□□□□ 0.34
CLN3-242ENST00000635958 CNTROBQ8N137 903 aa17.18■□□□□ 0.34
CLN3-242ENST00000635958 EVI5LQ96CN4 794 aa17.18■□□□□ 0.34
CLN3-242ENST00000635958 DLEC1Q9Y238 1755 aa17.18■□□□□ 0.34
CLN3-242ENST00000635958 TRIM6-TRIM34B2RNG4 842 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 DPEP1P16444 411 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 PHKA1P46020 1223 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 KCNJ4P48050 445 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 SLC51AQ86UW1 340 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 TICAM2Q86XR7 235 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 FAM84BQ96KN1 310 aaPredicted RBP17.17■□□□□ 0.34
CLN3-242ENST00000635958 NSFL1CQ9UNZ2 370 aaKnown RBP17.17■□□□□ 0.34
CLN3-242ENST00000635958 CDC45O75419 566 aa17.17■□□□□ 0.34
CLN3-242ENST00000635958 SLX4Q8IY92 1834 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 LTBP1Q14766 1721 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 A0A0G2JLW4 131 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 BCAMP50895 628 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 CAVIN4Q5BKX8 364 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 CC2D2BQ6DHV5 1058 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 TTLL6Q8N841 843 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 TBC1D16Q8TBP0 767 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 RILPL2Q969X0 211 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 GGA1Q9UJY5 639 aa17.16■□□□□ 0.34
CLN3-242ENST00000635958 MAP4K4O95819 1239 aaPredicted RBP17.15■□□□□ 0.34
CLN3-242ENST00000635958 SCARF1Q14162 830 aa17.15■□□□□ 0.34
CLN3-242ENST00000635958 TBC1D9Q6ZT07 1266 aa17.15■□□□□ 0.34
CLN3-242ENST00000635958 TMX4Q9H1E5 349 aaPredicted RBP17.15■□□□□ 0.34
CLN3-242ENST00000635958 KIAA1551Q9HCM1 1747 aa17.15■□□□□ 0.34
CLN3-242ENST00000635958 AKAP11Q9UKA4 1901 aa17.15■□□□□ 0.34
CLN3-242ENST00000635958 MCAMP43121 646 aa17.14■□□□□ 0.34
CLN3-242ENST00000635958 MPNDQ8N594 471 aa17.14■□□□□ 0.34
CLN3-242ENST00000635958 POLLQ9UGP5 575 aa17.14■□□□□ 0.34
CLN3-242ENST00000635958 KLRK1P26718 216 aa17.14■□□□□ 0.33
CLN3-242ENST00000635958 HIBADHP31937 336 aaKnown RBP17.14■□□□□ 0.33
CLN3-242ENST00000635958 GYG1P46976 350 aa17.14■□□□□ 0.33
CLN3-242ENST00000635958 GRIPAP1Q4V328 841 aa17.14■□□□□ 0.33
CLN3-242ENST00000635958 TXNRD3Q86VQ6 643 aa17.14■□□□□ 0.33
CLN3-242ENST00000635958 GNL3LQ9NVN8 582 aaKnown RBP17.14■□□□□ 0.33
CLN3-242ENST00000635958 PAG1Q9NWQ8 432 aa17.14■□□□□ 0.33
CLN3-242ENST00000635958 SEMA3EO15041 775 aa17.13■□□□□ 0.33
CLN3-242ENST00000635958 UFL1O94874 794 aa17.13■□□□□ 0.33
CLN3-242ENST00000635958 CHMLP26374 656 aa17.13■□□□□ 0.33
CLN3-242ENST00000635958 DNAJC2Q99543 621 aaKnown RBP17.13■□□□□ 0.33
CLN3-242ENST00000635958 HMG20BQ9P0W2 317 aa17.13■□□□□ 0.33
CLN3-242ENST00000635958 PIM2Q9P1W9 311 aa17.13■□□□□ 0.33
CLN3-242ENST00000635958 SNED1Q8TER0 1413 aa17.13■□□□□ 0.33
CLN3-242ENST00000635958 RASGRF1Q13972 1273 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 OLFM4Q6UX06 510 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 KBTBD3Q8NAB2 608 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 EDC3Q96F86 508 aaKnown RBP17.12■□□□□ 0.33
CLN3-242ENST00000635958 RTFDC1Q9BY42 306 aaPredicted RBP17.12■□□□□ 0.33
CLN3-242ENST00000635958 MED23Q9ULK4 1368 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 ZAP70P43403 619 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 GSE1Q14687 1217 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 DPP8Q6V1X1 898 aaPredicted RBP17.12■□□□□ 0.33
CLN3-242ENST00000635958 SPATA5Q8NB90 893 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 PPP1R1BQ9UD71 204 aaPredicted RBP17.12■□□□□ 0.33
CLN3-242ENST00000635958 NDUFB9Q9Y6M9 179 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 RFX7Q2KHR2 1363 aa17.12■□□□□ 0.33
CLN3-242ENST00000635958 CACNA1SQ13698 1873 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 AK9Q5TCS8 1911 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 GOLIM4O00461 696 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 EIF5BO60841 1220 aaKnown RBP17.11■□□□□ 0.33
CLN3-242ENST00000635958 FKBP4Q02790 459 aaKnown RBP eCLIP17.11■□□□□ 0.33
CLN3-242ENST00000635958 BECN1Q14457 450 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 NFKBIBQ15653 356 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 CASC1Q6TDU7 716 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 VPS37DQ86XT2 251 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 SNRKQ9NRH2 765 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 PDS5AQ29RF7 1337 aaKnown RBP17.11■□□□□ 0.33
CLN3-242ENST00000635958 DUOX1Q9NRD9 1551 aa17.11■□□□□ 0.33
CLN3-242ENST00000635958 C6orf229H3BNL8 230 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 HIP1O00291 1037 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 CYP2E1P05181 493 aaPredicted RBP17.1■□□□□ 0.33
CLN3-242ENST00000635958 TTF1Q15361 905 aaPredicted RBP17.1■□□□□ 0.33
CLN3-242ENST00000635958 PI16Q6UXB8 463 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 ANTXR1Q9H6X2 564 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 SEC24BO95487 1268 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 ZNF804AQ7Z570 1209 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 TDRD7Q8NHU6 1098 aaKnown RBP17.1■□□□□ 0.33
CLN3-242ENST00000635958 FSD1Q9BTV5 496 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 DENND2AQ9ULE3 1009 aa17.1■□□□□ 0.33
CLN3-242ENST00000635958 BRCA1P38398 1863 aaKnown RBP17.08■□□□□ 0.33
CLN3-242ENST00000635958 C21orf2O43822 256 aa17.08■□□□□ 0.33
CLN3-242ENST00000635958 IL1R1P14778 569 aa17.08■□□□□ 0.33
CLN3-242ENST00000635958 CCDC93Q567U6 631 aa17.08■□□□□ 0.33
CLN3-242ENST00000635958 DALRD3Q5D0E6 543 aaKnown RBP17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms