RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SIPA1L3O60292 1781 aaPredicted RBP15.2■□□□□ 0.02
CCDC88A-214ENST00000621814 GOLGA6L6A8MZA4 724 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 PDIA4P13667 645 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 LRMPQ12912 555 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 SYTL4Q96C24 671 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 USP28Q96RU2 1077 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 PDCL3Q9H2J4 239 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 GJB4Q9NTQ9 266 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 IL2RBP14784 551 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 ZSCAN16Q9H4T2 348 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 JCADQ9P266 1359 aa15.19■□□□□ 0.02
CCDC88A-214ENST00000621814 TNS3Q68CZ2 1445 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 PDIA3P30101 505 aaKnown RBP15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 ZAP70P43403 619 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 ASAP1Q9ULH1 1129 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 DNAJC10Q8IXB1 793 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 DSCC1Q9BVC3 393 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 TMOD3Q9NYL9 352 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 APPP05067 770 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 TERF1P54274 439 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 BRINP3Q76B58 766 aa15.18■□□□□ 0.02
CCDC88A-214ENST00000621814 SCN11AQ9UI33 1791 aa15.17■□□□□ 0.02
CCDC88A-214ENST00000621814 WDR17Q8IZU2 1322 aa15.17■□□□□ 0.02
CCDC88A-214ENST00000621814 EXOSC10Q01780 885 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-214ENST00000621814 PUS7LQ9H0K6 701 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-214ENST00000621814 GOLPH3LQ9H4A5 285 aa15.17■□□□□ 0.02
CCDC88A-214ENST00000621814 IFIT5Q13325 482 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-214ENST00000621814 ERVV-2B6SEH9 535 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 GOLGA6L19H0YKK7 550 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 FGAP02671 866 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 METTL24Q5JXM2 366 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 SMARCC2Q8TAQ2 1214 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 RXRAP19793 462 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 KIF6Q6ZMV9 814 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 CCDC73Q6ZRK6 1079 aa15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 AFDNP55196 1824 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-214ENST00000621814 DYNC1I1O14576 645 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 HMGN5P82970 282 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 TCIRG1Q13488 830 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 SF3A1Q15459 793 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 IMMTQ16891 758 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 LDHAL6AQ6ZMR3 332 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 C11orf57Q6ZUT1 292 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 KIF3AQ9Y496 699 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 MRC1P22897 1456 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 ZNF142P52746 1687 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 KLF18A0A0U1RQI7 1052 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 BECN2A8MW95 431 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 ADD1P35611 737 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 FSIP1Q8NA03 581 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 KIAA1524Q8TCG1 905 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 DENND2AQ9ULE3 1009 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 A0A1B0GVL5 298 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 CPLX1O14810 134 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 KINO60870 393 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 HLFQ16534 295 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 LLPHQ9BRT6 129 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 CNNM1Q9NRU3 951 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 CLIP2Q9UDT6 1046 aa15.15■□□□□ 0.02
CCDC88A-214ENST00000621814 PALLDQ8WX93 1383 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 GOLGA8BA8MQT2 603 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 PRC1O43663 620 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 IDH1O75874 414 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 RALYLQ86SE5 291 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 CCDC144CPQ8IYA2 1237 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 STK11IPQ8N1F8 1099 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 HELBQ8NG08 1087 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 DNAJC5Q9H3Z4 198 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 CAMTA1Q9Y6Y1 1673 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 C16orf45Q96MC5 204 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 SDF4Q9BRK5 362 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 GPR108Q9NPR9 543 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 AKAP2Q9Y2D5 859 aa15.14■□□□□ 0.01
CCDC88A-214ENST00000621814 ZNF75DP51815 510 aa15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 NAA16Q6N069 864 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 MYRIPQ8NFW9 859 aa15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 ZNF396Q96N95 335 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 GREM2Q9H772 168 aa15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 ZNF213O14771 459 aa15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 FDPSP14324 419 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 CHAF1AQ13111 956 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 C8orf76Q96K31 380 aa15.13■□□□□ 0.01
CCDC88A-214ENST00000621814 ALS2Q96Q42 1657 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 GPAA1O43292 621 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ITGA6P23229 1130 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ATP2B3Q16720 1220 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 SLC9C2Q5TAH2 1124 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ISM2Q6H9L7 571 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 FILIP1Q7Z7B0 1213 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ILDR1Q86SU0 546 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 PIGBQ92521 554 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ORC3Q9UBD5 711 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 CTNNA3Q9UI47 895 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 RCOR1Q9UKL0 485 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 CLIC4Q9Y696 253 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 RFX7Q2KHR2 1363 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 CARMIL3Q8ND23 1372 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ADAMTS7Q9UKP4 1686 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 KAT6BQ8WYB5 2073 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 KIF1AQ12756 1690 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms