RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 SPEF2Q9C093 1822 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 PDE8BO95263 885 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 DSCC1Q9BVC3 393 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 GDPD2Q9HCC8 539 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 SEC31BQ9NQW1 1179 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 RREB1Q92766 1687 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 TICAM2Q86XR7 235 aa25.34■■□□□ 1.65
LIME1-210ENST00000621325 LINC00116Q8NCU8 138 aa25.34■■□□□ 1.65
LIME1-210ENST00000621325 ALDH8A1Q9H2A2 487 aaPredicted RBP25.34■■□□□ 1.65
LIME1-210ENST00000621325 ZSCAN22P10073 491 aaPredicted RBP25.34■■□□□ 1.65
LIME1-210ENST00000621325 ANKRD1Q15327 319 aa25.33■■□□□ 1.65
LIME1-210ENST00000621325 SMIM5Q71RC9 77 aa25.33■■□□□ 1.65
LIME1-210ENST00000621325 RBM27Q9P2N5 1060 aaKnown RBP25.33■■□□□ 1.65
LIME1-210ENST00000621325 GRPEL1Q9HAV7 217 aa25.33■■□□□ 1.64
LIME1-210ENST00000621325 SNAP23O00161 211 aa25.32■■□□□ 1.64
LIME1-210ENST00000621325 STK3Q13188 491 aa25.32■■□□□ 1.64
LIME1-210ENST00000621325 WASHC4Q2M389 1173 aa25.32■■□□□ 1.64
LIME1-210ENST00000621325 NAP1L5Q96NT1 182 aaPredicted RBP25.32■■□□□ 1.64
LIME1-210ENST00000621325 LRRC2Q9BYS8 371 aa25.32■■□□□ 1.64
LIME1-210ENST00000621325 NTSR2O95665 410 aa25.32■■□□□ 1.64
LIME1-210ENST00000621325 TTLL5Q6EMB2 1281 aa25.32■■□□□ 1.64
LIME1-210ENST00000621325 MRE11P49959 708 aa25.31■■□□□ 1.64
LIME1-210ENST00000621325 PARP10Q53GL7 1025 aa25.31■■□□□ 1.64
LIME1-210ENST00000621325 AK7Q96M32 723 aa25.31■■□□□ 1.64
LIME1-210ENST00000621325 PHKA1P46020 1223 aa25.31■■□□□ 1.64
LIME1-210ENST00000621325 Q6ZUG5 572 aa25.31■■□□□ 1.64
LIME1-210ENST00000621325 CICQ96RK0 1608 aaPredicted RBP25.3■■□□□ 1.64
LIME1-210ENST00000621325 FOXP2O15409 715 aa25.3■■□□□ 1.64
LIME1-210ENST00000621325 MTMR6Q9Y217 621 aa25.3■■□□□ 1.64
LIME1-210ENST00000621325 ZSCAN23Q3MJ62 389 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 FAM182BQ5T319 152 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 PUS7LQ9H0K6 701 aaKnown RBP25.29■■□□□ 1.64
LIME1-210ENST00000621325 F13A1P00488 732 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 CCDC102BQ68D86 513 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 FNBP4Q8N3X1 1017 aaPredicted RBP25.29■■□□□ 1.64
LIME1-210ENST00000621325 ABCC12Q96J65 1359 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 LRP5O75197 1615 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 AKAP11Q9UKA4 1901 aa25.29■■□□□ 1.64
LIME1-210ENST00000621325 FGFR2P21802 821 aa25.28■■□□□ 1.64
LIME1-210ENST00000621325 PUM3Q15397 648 aaKnown RBP25.28■■□□□ 1.64
LIME1-210ENST00000621325 MROH5Q6ZUA9 1318 aa25.28■■□□□ 1.64
LIME1-210ENST00000621325 COL5A3P25940 1745 aaPredicted RBP25.28■■□□□ 1.64
LIME1-210ENST00000621325 ZFYP08048 801 aaPredicted RBP25.27■■□□□ 1.64
LIME1-210ENST00000621325 PIH1D3Q9NQM4 214 aaKnown RBP25.27■■□□□ 1.64
LIME1-210ENST00000621325 TMEM63CQ9P1W3 806 aa25.27■■□□□ 1.64
LIME1-210ENST00000621325 ISY1Q9ULR0 285 aaKnown RBP25.27■■□□□ 1.64
LIME1-210ENST00000621325 CNPY2Q9Y2B0 182 aa25.27■■□□□ 1.64
LIME1-210ENST00000621325 TCHHQ07283 1943 aa25.27■■□□□ 1.64
LIME1-210ENST00000621325 GADD45BO75293 160 aaPredicted RBP25.27■■□□□ 1.64
LIME1-210ENST00000621325 LRRFIP1Q32MZ4 808 aaKnown RBP25.27■■□□□ 1.64
LIME1-210ENST00000621325 USP48Q86UV5 1035 aa25.27■■□□□ 1.64
LIME1-210ENST00000621325 ZNF512BQ96KM6 892 aaPredicted RBP25.27■■□□□ 1.64
LIME1-210ENST00000621325 E7EWF7 191 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 FGD1P98174 961 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 LPIN2Q92539 896 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 APPBP2Q92624 585 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 BRF1Q92994 677 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 MPHOSPH8Q99549 860 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 USP21Q9UK80 565 aa25.26■■□□□ 1.63
LIME1-210ENST00000621325 DDX60Q8IY21 1712 aaKnown RBP25.26■■□□□ 1.63
LIME1-210ENST00000621325 VPS37CA5D8V6 355 aaPredicted RBP25.26■■□□□ 1.63
LIME1-210ENST00000621325 CCDC152Q4G0S7 254 aa25.25■■□□□ 1.63
LIME1-210ENST00000621325 DHX32Q7L7V1 743 aaKnown RBP25.25■■□□□ 1.63
LIME1-210ENST00000621325 ZNF652Q9Y2D9 606 aa25.24■■□□□ 1.63
LIME1-210ENST00000621325 LAMA4Q16363 1823 aa25.24■■□□□ 1.63
LIME1-210ENST00000621325 HSP90B1P14625 803 aaKnown RBP25.24■■□□□ 1.63
LIME1-210ENST00000621325 ARID4AP29374 1257 aaPredicted RBP25.24■■□□□ 1.63
LIME1-210ENST00000621325 ZNF445P59923 1031 aa25.24■■□□□ 1.63
LIME1-210ENST00000621325 HAND2P61296 217 aa25.24■■□□□ 1.63
LIME1-210ENST00000621325 LARP1BQ659C4 914 aaKnown RBP25.24■■□□□ 1.63
LIME1-210ENST00000621325 IDH1O75874 414 aaKnown RBP25.23■■□□□ 1.63
LIME1-210ENST00000621325 SLC9C2Q5TAH2 1124 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 C3orf67Q6ZVT6 689 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 CHST3Q7LGC8 479 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 GTF3C6Q969F1 213 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 GPAA1O43292 621 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 ADD2P35612 726 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 EXOSC10Q01780 885 aaKnown RBP25.23■■□□□ 1.63
LIME1-210ENST00000621325 BICDL1Q6ZP65 573 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 COL4A1P02462 1669 aa25.23■■□□□ 1.63
LIME1-210ENST00000621325 JAK2O60674 1132 aa25.22■■□□□ 1.63
LIME1-210ENST00000621325 MBD3O95983 291 aa25.22■■□□□ 1.63
LIME1-210ENST00000621325 FGAP02671 866 aa25.22■■□□□ 1.63
LIME1-210ENST00000621325 HMGB1P09429 215 aaKnown RBP25.22■■□□□ 1.63
LIME1-210ENST00000621325 ERFEQ4G0M1 354 aa25.22■■□□□ 1.63
LIME1-210ENST00000621325 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.22■■□□□ 1.633e-7■■■■■ 30.8
LIME1-210ENST00000621325 SLC5A1P13866 664 aa25.21■■□□□ 1.63
LIME1-210ENST00000621325 CLEC4GQ6UXB4 293 aa25.21■■□□□ 1.63
LIME1-210ENST00000621325 CDC37L1Q7L3B6 337 aa25.21■■□□□ 1.63
LIME1-210ENST00000621325 MYO5AQ9Y4I1 1855 aaKnown RBP25.21■■□□□ 1.63
LIME1-210ENST00000621325 WWC3Q9ULE0 1092 aa25.21■■□□□ 1.63
LIME1-210ENST00000621325 UQCRFS1P1P0C7P4 283 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 IGHMBP2P38935 993 aaKnown RBP25.2■■□□□ 1.62
LIME1-210ENST00000621325 DNM1Q05193 864 aaKnown RBP25.2■■□□□ 1.62
LIME1-210ENST00000621325 APOBRQ0VD83 1088 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 MYH7P12883 1935 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 CNTNAP4Q9C0A0 1308 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 SCRN1Q12765 414 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 RASGRF1Q13972 1273 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 TTF1Q15361 905 aaPredicted RBP25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms