RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NUP133Q8WUM0 1156 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 UTP14AQ9BVJ6 771 aaKnown RBP14.6□□□□□ -0.07
LIG1-221ENST00000613670 DBNLQ9UJU6 430 aaKnown RBP14.6□□□□□ -0.07
LIG1-221ENST00000613670 A2ML1A8K2U0 1454 aa14.59□□□□□ -0.07
LIG1-221ENST00000613670 NEURL4Q96JN8 1562 aa14.59□□□□□ -0.07
LIG1-221ENST00000613670 GCKRQ14397 625 aa14.59□□□□□ -0.07
LIG1-221ENST00000613670 TMEM2Q9UHN6 1383 aa14.59□□□□□ -0.07
LIG1-221ENST00000613670 KCNG4Q8TDN1 519 aa14.59□□□□□ -0.07
LIG1-221ENST00000613670 CNNM1Q9NRU3 951 aa14.59□□□□□ -0.07
LIG1-221ENST00000613670 PRC1O43663 620 aa14.58□□□□□ -0.08
LIG1-221ENST00000613670 GCP02774 474 aa14.58□□□□□ -0.08
LIG1-221ENST00000613670 ZNF594Q96JF6 807 aaPredicted RBP14.58□□□□□ -0.08
LIG1-221ENST00000613670 ZSCAN12O43309 604 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 RESTQ13127 1097 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 UTP14CQ5TAP6 766 aaKnown RBP14.57□□□□□ -0.08
LIG1-221ENST00000613670 ERICH2A1L162 156 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 CASQ1P31415 396 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 CHRNA2Q15822 529 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 ALG1Q9BT22 464 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 FUCA2Q9BTY2 467 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 NEURL1BA8MQ27 555 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 SNRPA1P09661 255 aaKnown RBP14.57□□□□□ -0.08
LIG1-221ENST00000613670 TAF3Q5VWG9 929 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 ZNF790Q6PG37 636 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 PPFIBP1Q86W92 1011 aa14.57□□□□□ -0.08
LIG1-221ENST00000613670 ATP5JP18859 108 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 KBTBD3Q8NAB2 608 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 MRFAP1L1Q96HT8 127 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 PRDM4Q9UKN5 801 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 PCDHA7Q9UN72 937 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 TBC1D2BQ9UPU7 963 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 SETD1BQ9UPS6 1966 aaKnown RBP14.56□□□□□ -0.08
LIG1-221ENST00000613670 HSP90B2PQ58FF3 399 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 NDUFA8P51970 172 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 COL9A3Q14050 684 aaPredicted RBP14.56□□□□□ -0.08
LIG1-221ENST00000613670 DPCR1Q3MIW9 517 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 BBXQ8WY36 941 aaPredicted RBP14.56□□□□□ -0.08
LIG1-221ENST00000613670 ZNF496Q96IT1 587 aaPredicted RBP14.56□□□□□ -0.08
LIG1-221ENST00000613670 CARD6Q9BX69 1037 aa14.56□□□□□ -0.08
LIG1-221ENST00000613670 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.56□□□□□ -0.084e-7■■■■□ 19.6
LIG1-221ENST00000613670 ZNF202O95125 648 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 KARSQ15046 597 aaKnown RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 METTL24Q5JXM2 366 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 EPHA10Q5JZY3 1008 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 SPECC1Q5M775 1068 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 NAA16Q6N069 864 aaPredicted RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 PROSER2Q86WR7 435 aaPredicted RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 TIGD1Q96MW7 591 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 GPHNQ9NQX3 736 aaPredicted RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 KDRP35968 1356 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 E7EWF7 191 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 FANCCQ00597 558 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 NSUN7Q8NE18 718 aaKnown RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 NCOA7Q8NI08 942 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 METTL22Q9BUU2 404 aaPredicted RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 CDKL5O76039 1030 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 METAP2P50579 478 aaKnown RBP eCLIP14.55□□□□□ -0.08
LIG1-221ENST00000613670 GOLGA8FQ08AF8 430 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 GOLGA8DPQ0D2H9 430 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 TSR1Q2NL82 804 aaKnown RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 CCDC102BQ68D86 513 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 LLPHQ9BRT6 129 aaKnown RBP14.55□□□□□ -0.08
LIG1-221ENST00000613670 GJB4Q9NTQ9 266 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 CALCOCO1Q9P1Z2 691 aa14.55□□□□□ -0.08
LIG1-221ENST00000613670 GABPB1Q06547 395 aaPredicted RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 PLA2G4DQ86XP0 818 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 RNF113AO15541 343 aaKnown RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 ST3GAL1Q11201 340 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 DHX8Q14562 1220 aaKnown RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 TRIM22Q8IYM9 498 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 CCDC12Q8WUD4 166 aaPredicted RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 PCMTD1Q96MG8 357 aaPredicted RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 CWC25Q9NXE8 425 aaPredicted RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 KIAA1468Q9P260 1216 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 TBX22Q9Y458 520 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 TULP1O00294 542 aaPredicted RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 IARSP41252 1262 aaKnown RBP14.54□□□□□ -0.08
LIG1-221ENST00000613670 SLC26A6Q9BXS9 759 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 CLIC4Q9Y696 253 aa14.54□□□□□ -0.08
LIG1-221ENST00000613670 FRMPD1Q5SYB0 1578 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 GOLGA8AA7E2F4 631 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 PFKFB2O60825 505 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 FBXO38Q6PIJ6 1188 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 GOLPH3LQ9H4A5 285 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 KIF4BQ2VIQ3 1234 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 MTMR7Q9Y216 660 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 FILIP1LQ4L180 1135 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 RCOR1Q9UKL0 485 aa14.53□□□□□ -0.08
LIG1-221ENST00000613670 ADCY9O60503 1353 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 A0A1B0GUL7 405 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 GPTP24298 496 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 EVCP57679 992 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 IFNL2Q8IZJ0 200 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 CCDC102AQ96A19 550 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 AIDAQ96BJ3 306 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 ORAI2Q96SN7 254 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 MCM6Q14566 821 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 ANO1Q5XXA6 986 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 ANKLE2Q86XL3 938 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 ANKRD20A12PQ8NF67 263 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms