RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 VIL1P09327 827 aaKnown RBP24.11■■□□□ 1.45
UPF1-212ENST00000601689 EPS15P42566 896 aa24.11■■□□□ 1.45
UPF1-212ENST00000601689 C15orf52Q6ZUT6 534 aaKnown RBP24.11■■□□□ 1.45
UPF1-212ENST00000601689 CHMP4BQ9H444 224 aaKnown RBP24.11■■□□□ 1.45
UPF1-212ENST00000601689 RIPOR2Q9Y4F9 1068 aa24.11■■□□□ 1.45
UPF1-212ENST00000601689 APLP1P51693 650 aa24.1■■□□□ 1.45
UPF1-212ENST00000601689 VPS37DQ86XT2 251 aa24.1■■□□□ 1.45
UPF1-212ENST00000601689 AGBL3Q8NEM8 1001 aa24.1■■□□□ 1.45
UPF1-212ENST00000601689 YTHDC1Q96MU7 727 aaKnown RBP24.1■■□□□ 1.45
UPF1-212ENST00000601689 PUS3Q9BZE2 481 aaKnown RBP24.1■■□□□ 1.45
UPF1-212ENST00000601689 MYO3BQ8WXR4 1341 aa24.1■■□□□ 1.45
UPF1-212ENST00000601689 EYA2O00167 538 aa24.09■■□□□ 1.45
UPF1-212ENST00000601689 CAVIN4Q5BKX8 364 aa24.09■■□□□ 1.45
UPF1-212ENST00000601689 RSBN1LQ6PCB5 846 aaPredicted RBP24.09■■□□□ 1.45
UPF1-212ENST00000601689 TNNQ9UQP3 1299 aa24.09■■□□□ 1.45
UPF1-212ENST00000601689 ZBTB12Q9Y330 459 aaPredicted RBP24.09■■□□□ 1.45
UPF1-212ENST00000601689 A0A1B0GUL6 1792 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 SRGAP3O43295 1099 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 PDE8BO95263 885 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 LRRC24Q50LG9 513 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 STRIP1Q5VSL9 837 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 TTLL5Q6EMB2 1281 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 MICALL2Q8IY33 904 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 CD209Q9NNX6 404 aa24.08■■□□□ 1.45
UPF1-212ENST00000601689 PSME4Q14997 1843 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 CIAO1O76071 339 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 IFIT1P09914 478 aaKnown RBP24.07■■□□□ 1.44
UPF1-212ENST00000601689 MMP14P50281 582 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 PTPN12Q05209 780 aaKnown RBP24.07■■□□□ 1.44
UPF1-212ENST00000601689 OGFOD1Q8N543 542 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 KLHDC4Q8TBB5 520 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 KCNQ5Q9NR82 932 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 CEP126Q9P2H0 1117 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 SCN9AQ15858 1988 aa24.07■■□□□ 1.44
UPF1-212ENST00000601689 WTIPA6NIX2 430 aaPredicted RBP24.06■■□□□ 1.44
UPF1-212ENST00000601689 TXNRD3Q86VQ6 643 aa24.06■■□□□ 1.44
UPF1-212ENST00000601689 FRAT2O75474 233 aaPredicted RBP24.05■■□□□ 1.44
UPF1-212ENST00000601689 HIBADHP31937 336 aaKnown RBP24.05■■□□□ 1.44
UPF1-212ENST00000601689 IL15P40933 162 aaPredicted RBP24.05■■□□□ 1.44
UPF1-212ENST00000601689 RFX5P48382 616 aaPredicted RBP24.05■■□□□ 1.44
UPF1-212ENST00000601689 PUM3Q15397 648 aaKnown RBP24.05■■□□□ 1.44
UPF1-212ENST00000601689 ZC3H15Q8WU90 426 aaKnown RBP24.05■■□□□ 1.44
UPF1-212ENST00000601689 SIL1Q9H173 461 aa24.05■■□□□ 1.44
UPF1-212ENST00000601689 POTEIP0CG38 1075 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 POTEJP0CG39 1038 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 SLC5A1P13866 664 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 MTX1Q13505 466 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 CNTROBQ8N137 903 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 COPRSQ9NQ92 184 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 HDAC9Q9UKV0 1011 aa24.04■■□□□ 1.44
UPF1-212ENST00000601689 SNAP23O00161 211 aa24.03■■□□□ 1.44
UPF1-212ENST00000601689 USP17L8P0C7I0 530 aa24.03■■□□□ 1.44
UPF1-212ENST00000601689 KLRK1P26718 216 aa24.03■■□□□ 1.44
UPF1-212ENST00000601689 GTF2IP78347 998 aa24.03■■□□□ 1.44
UPF1-212ENST00000601689 DDX19BQ9UMR2 479 aa24.03■■□□□ 1.44
UPF1-212ENST00000601689 IL1R1P14778 569 aa24.02■■□□□ 1.44
UPF1-212ENST00000601689 ZNF609O15014 1411 aa24.01■■□□□ 1.43
UPF1-212ENST00000601689 ZBTB7BO15156 539 aaPredicted RBP24.01■■□□□ 1.43
UPF1-212ENST00000601689 G3BP1Q13283 466 aaKnown RBP eCLIP24.01■■□□□ 1.434e-7■□□□□ 8.1
UPF1-212ENST00000601689 DACT2Q5SW24 774 aa24.01■■□□□ 1.43
UPF1-212ENST00000601689 RBM26Q5T8P6 1007 aaKnown RBP24.01■■□□□ 1.43
UPF1-212ENST00000601689 MAP1SQ66K74 1059 aaPredicted RBP24.01■■□□□ 1.43
UPF1-212ENST00000601689 PANK1Q8TE04 598 aa24.01■■□□□ 1.43
UPF1-212ENST00000601689 LPIN2Q92539 896 aa24.01■■□□□ 1.43
UPF1-212ENST00000601689 RLBP1P12271 317 aa24■■□□□ 1.43
UPF1-212ENST00000601689 KIF4BQ2VIQ3 1234 aa24■■□□□ 1.43
UPF1-212ENST00000601689 AKAP2Q9Y2D5 859 aa24■■□□□ 1.43
UPF1-212ENST00000601689 SASH1O94885 1247 aa23.99■■□□□ 1.43
UPF1-212ENST00000601689 GYG1P46976 350 aa23.99■■□□□ 1.43
UPF1-212ENST00000601689 PDE3AQ14432 1141 aa23.99■■□□□ 1.43
UPF1-212ENST00000601689 MVPQ14764 893 aaKnown RBP23.99■■□□□ 1.43
UPF1-212ENST00000601689 TBC1D10BQ4KMP7 808 aaPredicted RBP23.99■■□□□ 1.43
UPF1-212ENST00000601689 SAMD7Q7Z3H4 446 aa23.99■■□□□ 1.43
UPF1-212ENST00000601689 VGLL2Q8N8G2 317 aa23.99■■□□□ 1.43
UPF1-212ENST00000601689 DCPSQ96C86 337 aaKnown RBP23.99■■□□□ 1.43
UPF1-212ENST00000601689 PA2G4Q9UQ80 394 aaKnown RBP23.99■■□□□ 1.43
UPF1-212ENST00000601689 ADAMTSL1Q8N6G6 1762 aa23.98■■□□□ 1.43
UPF1-212ENST00000601689 FKBP1AP62942 108 aaKnown RBP23.98■■□□□ 1.43
UPF1-212ENST00000601689 ATP8B2P98198 1209 aa23.98■■□□□ 1.43
UPF1-212ENST00000601689 ATG9AQ7Z3C6 839 aa23.98■■□□□ 1.43
UPF1-212ENST00000601689 FAM84BQ96KN1 310 aaPredicted RBP23.98■■□□□ 1.43
UPF1-212ENST00000601689 GNL3LQ9NVN8 582 aaKnown RBP23.98■■□□□ 1.43
UPF1-212ENST00000601689 IRS2Q9Y4H2 1338 aa23.98■■□□□ 1.43
UPF1-212ENST00000601689 ZNF280AP59817 542 aaPredicted RBP23.97■■□□□ 1.43
UPF1-212ENST00000601689 OS9Q13438 667 aaPredicted RBP23.97■■□□□ 1.43
UPF1-212ENST00000601689 ATP2B3Q16720 1220 aa23.97■■□□□ 1.43
UPF1-212ENST00000601689 CDC37L1Q7L3B6 337 aa23.97■■□□□ 1.43
UPF1-212ENST00000601689 MYOZ2Q9NPC6 264 aa23.97■■□□□ 1.43
UPF1-212ENST00000601689 TDRD7Q8NHU6 1098 aaKnown RBP23.96■■□□□ 1.43
UPF1-212ENST00000601689 TRPM4Q8TD43 1214 aa23.96■■□□□ 1.43
UPF1-212ENST00000601689 GMLQ99445 158 aa23.96■■□□□ 1.43
UPF1-212ENST00000601689 FBXO33Q7Z6M2 555 aa23.95■■□□□ 1.42
UPF1-212ENST00000601689 KIAA0825Q8IV33 1275 aa23.95■■□□□ 1.42
UPF1-212ENST00000601689 TBC1D22AQ8WUA7 517 aa23.95■■□□□ 1.42
UPF1-212ENST00000601689 PGAP2Q9UHJ9 254 aa23.95■■□□□ 1.42
UPF1-212ENST00000601689 COG6Q9Y2V7 657 aa23.95■■□□□ 1.42
UPF1-212ENST00000601689 PNMA6EA0A0J9YXQ4 647 aa23.94■■□□□ 1.42
UPF1-212ENST00000601689 SHTN1A0MZ66 631 aa23.94■■□□□ 1.42
UPF1-212ENST00000601689 ITGBL1O95965 494 aaPredicted RBP23.94■■□□□ 1.42
UPF1-212ENST00000601689 FGFR2P21802 821 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms