RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 MAP4K4O95819 1239 aaPredicted RBP17.86■□□□□ 0.45
VRK3-212ENST00000596814 PHKA1P46020 1223 aa17.86■□□□□ 0.45
VRK3-212ENST00000596814 CCDC102BQ68D86 513 aa17.86■□□□□ 0.45
VRK3-212ENST00000596814 CNTROBQ8N137 903 aa17.86■□□□□ 0.45
VRK3-212ENST00000596814 KLHL34Q8N239 644 aa17.86■□□□□ 0.45
VRK3-212ENST00000596814 PPP1R1BQ9UD71 204 aaPredicted RBP17.86■□□□□ 0.45
VRK3-212ENST00000596814 GGA1Q9UJY5 639 aa17.86■□□□□ 0.45
VRK3-212ENST00000596814 CD2APQ9Y5K6 639 aa17.86■□□□□ 0.45
VRK3-212ENST00000596814 WTIPA6NIX2 430 aaPredicted RBP17.85■□□□□ 0.45
VRK3-212ENST00000596814 ATP2B4P23634 1241 aa17.85■□□□□ 0.45
VRK3-212ENST00000596814 C8orf34Q49A92 452 aa17.85■□□□□ 0.45
VRK3-212ENST00000596814 RILPL2Q969X0 211 aa17.85■□□□□ 0.45
VRK3-212ENST00000596814 ZNF512BQ96KM6 892 aaPredicted RBP17.85■□□□□ 0.45
VRK3-212ENST00000596814 HAUS7Q99871 368 aa17.85■□□□□ 0.45
VRK3-212ENST00000596814 AKAP11Q9UKA4 1901 aa17.85■□□□□ 0.45
VRK3-212ENST00000596814 DUOX1Q9NRD9 1551 aa17.85■□□□□ 0.45
VRK3-212ENST00000596814 UFL1O94874 794 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 UQCRFS1P1P0C7P4 283 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 KCNA3P22001 575 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 ARID4AP29374 1257 aaPredicted RBP17.84■□□□□ 0.45
VRK3-212ENST00000596814 CAVIN4Q5BKX8 364 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 TTLL6Q8N841 843 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 DNAJC2Q99543 621 aaKnown RBP17.84■□□□□ 0.45
VRK3-212ENST00000596814 MYH13Q9UKX3 1938 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 CDC45O75419 566 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 KLRK1P26718 216 aa17.84■□□□□ 0.45
VRK3-212ENST00000596814 GYG1P46976 350 aa17.83■□□□□ 0.44
VRK3-212ENST00000596814 BCAMP50895 628 aa17.83■□□□□ 0.44
VRK3-212ENST00000596814 OLFM4Q6UX06 510 aa17.83■□□□□ 0.44
VRK3-212ENST00000596814 MPNDQ8N594 471 aa17.83■□□□□ 0.44
VRK3-212ENST00000596814 EVI5LQ96CN4 794 aa17.83■□□□□ 0.44
VRK3-212ENST00000596814 IRS2Q9Y4H2 1338 aa17.82■□□□□ 0.44
VRK3-212ENST00000596814 MCAMP43121 646 aa17.82■□□□□ 0.44
VRK3-212ENST00000596814 SCARF1Q14162 830 aa17.82■□□□□ 0.44
VRK3-212ENST00000596814 DPP8Q6V1X1 898 aaPredicted RBP17.82■□□□□ 0.44
VRK3-212ENST00000596814 VPS37DQ86XT2 251 aa17.82■□□□□ 0.44
VRK3-212ENST00000596814 TBC1D16Q8TBP0 767 aa17.82■□□□□ 0.44
VRK3-212ENST00000596814 C6orf229H3BNL8 230 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 CC2D2BQ6DHV5 1058 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 C15orf52Q6ZUT6 534 aaKnown RBP17.81■□□□□ 0.44
VRK3-212ENST00000596814 C7orf43Q8WVR3 580 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 FAM84BQ96KN1 310 aaPredicted RBP17.81■□□□□ 0.44
VRK3-212ENST00000596814 BACH2Q9BYV9 841 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 GNL3LQ9NVN8 582 aaKnown RBP17.81■□□□□ 0.44
VRK3-212ENST00000596814 PAG1Q9NWQ8 432 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 PIM2Q9P1W9 311 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 ZNF219Q9P2Y4 722 aaPredicted RBP17.81■□□□□ 0.44
VRK3-212ENST00000596814 POLLQ9UGP5 575 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 NDUFB9Q9Y6M9 179 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 MED23Q9ULK4 1368 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 FBXO33Q7Z6M2 555 aa17.81■□□□□ 0.44
VRK3-212ENST00000596814 EDC3Q96F86 508 aaKnown RBP17.81■□□□□ 0.44
VRK3-212ENST00000596814 GPR101Q96P66 508 aaPredicted RBP17.81■□□□□ 0.44
VRK3-212ENST00000596814 SNED1Q8TER0 1413 aa17.8■□□□□ 0.44
VRK3-212ENST00000596814 GOLIM4O00461 696 aa17.8■□□□□ 0.44
VRK3-212ENST00000596814 HIBADHP31937 336 aaKnown RBP17.8■□□□□ 0.44
VRK3-212ENST00000596814 FKBP4Q02790 459 aaKnown RBP eCLIP17.8■□□□□ 0.44
VRK3-212ENST00000596814 RASGRF1Q13972 1273 aa17.8■□□□□ 0.44
VRK3-212ENST00000596814 TBC1D9Q6ZT07 1266 aa17.8■□□□□ 0.44
VRK3-212ENST00000596814 TXNRD3Q86VQ6 643 aa17.8■□□□□ 0.44
VRK3-212ENST00000596814 SNRKQ9NRH2 765 aa17.8■□□□□ 0.44
VRK3-212ENST00000596814 C21orf2O43822 256 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 ZAP70P43403 619 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 CASC1Q6TDU7 716 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 PI16Q6UXB8 463 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 ZNF804AQ7Z570 1209 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 FSD1Q9BTV5 496 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 RFX7Q2KHR2 1363 aa17.79■□□□□ 0.44
VRK3-212ENST00000596814 CCDC93Q567U6 631 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 SPATA5Q8NB90 893 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 HMG20BQ9P0W2 317 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 MYH7P12883 1935 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 SEMA3EO15041 775 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 GRIPAP1Q4V328 841 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 DALRD3Q5D0E6 543 aaKnown RBP17.78■□□□□ 0.44
VRK3-212ENST00000596814 KBTBD3Q8NAB2 608 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 EYA3Q99504 573 aa17.78■□□□□ 0.44
VRK3-212ENST00000596814 COL1A1P02452 1464 aaPredicted RBP17.77■□□□□ 0.44
VRK3-212ENST00000596814 DOCK2Q92608 1830 aa17.77■□□□□ 0.44
VRK3-212ENST00000596814 SOGA3Q5TF21 947 aa17.77■□□□□ 0.44
VRK3-212ENST00000596814 DENND2AQ9ULE3 1009 aa17.77■□□□□ 0.44
VRK3-212ENST00000596814 IQSEC3Q9UPP2 1182 aaPredicted RBP17.77■□□□□ 0.44
VRK3-212ENST00000596814 SOCS7O14512 581 aa17.76■□□□□ 0.43
VRK3-212ENST00000596814 ZBTB22O15209 634 aa17.76■□□□□ 0.43
VRK3-212ENST00000596814 FRAT2O75474 233 aaPredicted RBP17.76■□□□□ 0.43
VRK3-212ENST00000596814 CHMLP26374 656 aa17.76■□□□□ 0.43
VRK3-212ENST00000596814 TTF1Q15361 905 aaPredicted RBP17.76■□□□□ 0.43
VRK3-212ENST00000596814 NLGN2Q8NFZ4 835 aa17.76■□□□□ 0.43
VRK3-212ENST00000596814 RTFDC1Q9BY42 306 aaPredicted RBP17.76■□□□□ 0.43
VRK3-212ENST00000596814 ANTXR1Q9H6X2 564 aa17.76■□□□□ 0.43
VRK3-212ENST00000596814 WWC3Q9ULE0 1092 aa17.76■□□□□ 0.43
VRK3-212ENST00000596814 MYO5AQ9Y4I1 1855 aaKnown RBP17.76■□□□□ 0.43
VRK3-212ENST00000596814 HIP1O00291 1037 aa17.75■□□□□ 0.43
VRK3-212ENST00000596814 CYP2E1P05181 493 aaPredicted RBP17.75■□□□□ 0.43
VRK3-212ENST00000596814 RTKN2Q8IZC4 609 aa17.75■□□□□ 0.43
VRK3-212ENST00000596814 ZC3H12CQ9C0D7 883 aaKnown RBP17.75■□□□□ 0.43
VRK3-212ENST00000596814 DIAPH3Q9NSV4 1193 aa17.75■□□□□ 0.43
VRK3-212ENST00000596814 ARFGEF1Q9Y6D6 1849 aa17.75■□□□□ 0.43
VRK3-212ENST00000596814 WASHC4Q2M389 1173 aa17.75■□□□□ 0.43
VRK3-212ENST00000596814 SUPT20HQ8NEM7 779 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms