RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 HELBQ8NG08 1087 aaPredicted RBP20.33■□□□□ 0.85
TRIM28-206ENST00000595974 IRS2Q9Y4H2 1338 aa20.32■□□□□ 0.84
TRIM28-206ENST00000595974 TAF5LO75529 589 aa20.32■□□□□ 0.84
TRIM28-206ENST00000595974 KLRK1P26718 216 aa20.32■□□□□ 0.84
TRIM28-206ENST00000595974 RSBN1LQ6PCB5 846 aaPredicted RBP20.32■□□□□ 0.84
TRIM28-206ENST00000595974 AGBL3Q8NEM8 1001 aa20.32■□□□□ 0.84
TRIM28-206ENST00000595974 FRAT1Q92837 279 aaPredicted RBP20.32■□□□□ 0.84
TRIM28-206ENST00000595974 HTRA3P83110 453 aa20.31■□□□□ 0.84
TRIM28-206ENST00000595974 TRPM4Q8TD43 1214 aa20.31■□□□□ 0.84
TRIM28-206ENST00000595974 MROH5Q6ZUA9 1318 aa20.3■□□□□ 0.84
TRIM28-206ENST00000595974 POLR2AP24928 1970 aaKnown RBP20.3■□□□□ 0.84
TRIM28-206ENST00000595974 SHTN1A0MZ66 631 aa20.3■□□□□ 0.84
TRIM28-206ENST00000595974 ZKSCAN2Q63HK3 967 aa20.3■□□□□ 0.84
TRIM28-206ENST00000595974 ZC3H15Q8WU90 426 aaKnown RBP20.3■□□□□ 0.84
TRIM28-206ENST00000595974 PUS3Q9BZE2 481 aaKnown RBP20.3■□□□□ 0.84
TRIM28-206ENST00000595974 CREBZFQ9NS37 354 aa20.3■□□□□ 0.84
TRIM28-206ENST00000595974 RIPOR2Q9Y4F9 1068 aa20.3■□□□□ 0.84
TRIM28-206ENST00000595974 SNAP23O00161 211 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 STRIP1Q5VSL9 837 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 ZNF804AQ7Z570 1209 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 DNAJC5GQ8N7S2 189 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 GMLQ99445 158 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 MEIS3Q99687 375 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 PGAP2Q9UHJ9 254 aa20.29■□□□□ 0.84
TRIM28-206ENST00000595974 MYO3BQ8WXR4 1341 aa20.28■□□□□ 0.84
TRIM28-206ENST00000595974 PLIN1O60240 522 aa20.28■□□□□ 0.84
TRIM28-206ENST00000595974 GNAI3P08754 354 aa20.28■□□□□ 0.84
TRIM28-206ENST00000595974 HIRAP54198 1017 aaPredicted RBP20.28■□□□□ 0.84
TRIM28-206ENST00000595974 UBE4AQ14139 1066 aa20.28■□□□□ 0.84
TRIM28-206ENST00000595974 RFX5P48382 616 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-206ENST00000595974 TBC1D10BQ4KMP7 808 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-206ENST00000595974 DACT2Q5SW24 774 aa20.27■□□□□ 0.84
TRIM28-206ENST00000595974 SAMD7Q7Z3H4 446 aa20.27■□□□□ 0.84
TRIM28-206ENST00000595974 KLRG1Q96E93 195 aa20.27■□□□□ 0.84
TRIM28-206ENST00000595974 CD209Q9NNX6 404 aa20.27■□□□□ 0.84
TRIM28-206ENST00000595974 LRRFIP2Q9Y608 721 aaKnown RBP20.27■□□□□ 0.84
TRIM28-206ENST00000595974 ARAP2Q8WZ64 1704 aa20.27■□□□□ 0.83
TRIM28-206ENST00000595974 ZNF280AP59817 542 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-206ENST00000595974 KIF4BQ2VIQ3 1234 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 LRRC24Q50LG9 513 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 METTL24Q5JXM2 366 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 KLHDC4Q8TBB5 520 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 FBXW7Q969H0 707 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 CLUAP1Q96AJ1 413 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 TNNQ9UQP3 1299 aa20.26■□□□□ 0.83
TRIM28-206ENST00000595974 TMEM88BA6NKF7 163 aa20.25■□□□□ 0.83
TRIM28-206ENST00000595974 USP17L8P0C7I0 530 aa20.25■□□□□ 0.83
TRIM28-206ENST00000595974 PTPN12Q05209 780 aaKnown RBP20.25■□□□□ 0.83
TRIM28-206ENST00000595974 TTLL5Q6EMB2 1281 aa20.25■□□□□ 0.83
TRIM28-206ENST00000595974 FBXO3Q9UK99 471 aa20.25■□□□□ 0.83
TRIM28-206ENST00000595974 MYH13Q9UKX3 1938 aa20.25■□□□□ 0.83
TRIM28-206ENST00000595974 EYA2O00167 538 aa20.24■□□□□ 0.83
TRIM28-206ENST00000595974 EGFRP00533 1210 aa20.24■□□□□ 0.83
TRIM28-206ENST00000595974 IL1R1P14778 569 aa20.24■□□□□ 0.83
TRIM28-206ENST00000595974 VGLL2Q8N8G2 317 aa20.24■□□□□ 0.83
TRIM28-206ENST00000595974 PDE8BO95263 885 aa20.23■□□□□ 0.83
TRIM28-206ENST00000595974 MMP14P50281 582 aa20.23■□□□□ 0.83
TRIM28-206ENST00000595974 GTF2IP78347 998 aa20.23■□□□□ 0.83
TRIM28-206ENST00000595974 FTSJ3Q8IY81 847 aaKnown RBP20.23■□□□□ 0.83
TRIM28-206ENST00000595974 RBM26Q5T8P6 1007 aaKnown RBP20.22■□□□□ 0.83
TRIM28-206ENST00000595974 CDC37L1Q7L3B6 337 aa20.22■□□□□ 0.83
TRIM28-206ENST00000595974 OGFOD1Q8N543 542 aa20.22■□□□□ 0.83
TRIM28-206ENST00000595974 TMEM57Q8N5G2 664 aa20.22■□□□□ 0.83
TRIM28-206ENST00000595974 GLIS2Q9BZE0 524 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-206ENST00000595974 MYOZ2Q9NPC6 264 aa20.22■□□□□ 0.83
TRIM28-206ENST00000595974 ECM29Q5VYK3 1845 aa20.22■□□□□ 0.83
TRIM28-206ENST00000595974 TRAF5O00463 557 aa20.21■□□□□ 0.83
TRIM28-206ENST00000595974 CIAO1O76071 339 aa20.21■□□□□ 0.83
TRIM28-206ENST00000595974 MTX1Q13505 466 aa20.21■□□□□ 0.83
TRIM28-206ENST00000595974 PUM3Q15397 648 aaKnown RBP20.21■□□□□ 0.83
TRIM28-206ENST00000595974 MXD3Q9BW11 206 aa20.21■□□□□ 0.83
TRIM28-206ENST00000595974 CNTNAP1P78357 1384 aa20.21■□□□□ 0.83
TRIM28-206ENST00000595974 GNAI2P04899 355 aa20.2■□□□□ 0.82
TRIM28-206ENST00000595974 HIBADHP31937 336 aaKnown RBP20.2■□□□□ 0.82
TRIM28-206ENST00000595974 FKBP1AP62942 108 aaKnown RBP20.2■□□□□ 0.82
TRIM28-206ENST00000595974 ATG9AQ7Z3C6 839 aa20.2■□□□□ 0.82
TRIM28-206ENST00000595974 DZIP1LQ8IYY4 767 aaKnown RBP20.2■□□□□ 0.82
TRIM28-206ENST00000595974 JMYQ8N9B5 988 aa20.2■□□□□ 0.82
TRIM28-206ENST00000595974 DCPSQ96C86 337 aaKnown RBP20.2■□□□□ 0.82
TRIM28-206ENST00000595974 FAM84BQ96KN1 310 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-206ENST00000595974 GGA3Q9NZ52 723 aa20.2■□□□□ 0.82
TRIM28-206ENST00000595974 GYG1P46976 350 aa20.19■□□□□ 0.82
TRIM28-206ENST00000595974 FMR1Q06787 632 aaKnown RBP eCLIP20.19■□□□□ 0.821e-11■■■□□ 15.5
TRIM28-206ENST00000595974 TDRD7Q8NHU6 1098 aaKnown RBP20.19■□□□□ 0.82
TRIM28-206ENST00000595974 COPRSQ9NQ92 184 aa20.19■□□□□ 0.82
TRIM28-206ENST00000595974 HDAC9Q9UKV0 1011 aa20.19■□□□□ 0.82
TRIM28-206ENST00000595974 FAM205AQ6ZU69 1335 aa20.19■□□□□ 0.82
TRIM28-206ENST00000595974 PCNTO95613 3336 aa20.19■□□□□ 0.82
TRIM28-206ENST00000595974 SRGAP3O43295 1099 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 SASH1O94885 1247 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 IFIT1P09914 478 aaKnown RBP20.18■□□□□ 0.82
TRIM28-206ENST00000595974 FGFR2P21802 821 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 CAVIN4Q5BKX8 364 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 KRT26Q7Z3Y9 468 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 VPS37DQ86XT2 251 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 KIAA0825Q8IV33 1275 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 SIL1Q9H173 461 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 PITPNM2Q9BZ72 1349 aa20.18■□□□□ 0.82
TRIM28-206ENST00000595974 IL15P40933 162 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-206ENST00000595974 SCARF1Q14162 830 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms