RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 DDX19BQ9UMR2 479 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 SCAF8Q9UPN6 1271 aaKnown RBP12.76□□□□□ -0.37
SS18-207ENST00000577636 TAF1P21675 1872 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 IRS4O14654 1257 aaPredicted RBP12.75□□□□□ -0.37
SS18-207ENST00000577636 VIL1P09327 827 aaKnown RBP12.75□□□□□ -0.37
SS18-207ENST00000577636 SCARF1Q14162 830 aa12.75□□□□□ -0.37
SS18-207ENST00000577636 MVPQ14764 893 aaKnown RBP12.75□□□□□ -0.37
SS18-207ENST00000577636 HDGFL1Q5TGJ6 251 aa12.75□□□□□ -0.37
SS18-207ENST00000577636 ANGEL2Q5VTE6 544 aaKnown RBP12.75□□□□□ -0.37
SS18-207ENST00000577636 CTU1Q7Z7A3 348 aaKnown RBP12.75□□□□□ -0.37
SS18-207ENST00000577636 MRPL50Q8N5N7 158 aaKnown RBP12.75□□□□□ -0.37
SS18-207ENST00000577636 TSPYL6Q8N831 410 aa12.75□□□□□ -0.37
SS18-207ENST00000577636 RTL9Q8NET4 1388 aa12.75□□□□□ -0.37
SS18-207ENST00000577636 HDAC9Q9UKV0 1011 aa12.75□□□□□ -0.37
SS18-207ENST00000577636 UFL1O94874 794 aa12.74□□□□□ -0.37
SS18-207ENST00000577636 TRIM27P14373 513 aa12.74□□□□□ -0.37
SS18-207ENST00000577636 MOB2Q70IA6 237 aa12.74□□□□□ -0.37
SS18-207ENST00000577636 CENPQQ7L2Z9 268 aaPredicted RBP12.74□□□□□ -0.37
SS18-207ENST00000577636 ITPRIPQ8IWB1 547 aa12.74□□□□□ -0.37
SS18-207ENST00000577636 CCDC85AQ96PX6 553 aaPredicted RBP12.74□□□□□ -0.37
SS18-207ENST00000577636 ISCA1Q9BUE6 129 aa12.74□□□□□ -0.37
SS18-207ENST00000577636 SEC31BQ9NQW1 1179 aa12.74□□□□□ -0.37
SS18-207ENST00000577636 POLR2AP24928 1970 aaKnown RBP12.73□□□□□ -0.37
SS18-207ENST00000577636 TBC1D8O95759 1140 aa12.73□□□□□ -0.37
SS18-207ENST00000577636 CCDC30Q5VVM6 783 aa12.73□□□□□ -0.37
SS18-207ENST00000577636 PRAMEF18Q5VWM3 479 aa12.73□□□□□ -0.37
SS18-207ENST00000577636 RIC3Q7Z5B4 369 aa12.73□□□□□ -0.37
SS18-207ENST00000577636 RASAL3Q86YV0 1011 aa12.73□□□□□ -0.37
SS18-207ENST00000577636 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
SS18-207ENST00000577636 GGA1Q9UJY5 639 aa12.73□□□□□ -0.37
SS18-207ENST00000577636 LAMB2P55268 1798 aa12.72□□□□□ -0.37
SS18-207ENST00000577636 PTPRCP08575 1304 aa12.72□□□□□ -0.37
SS18-207ENST00000577636 UBE2Q2LH0YL09 131 aa12.72□□□□□ -0.37
SS18-207ENST00000577636 MKRN3Q13064 507 aaKnown RBP12.72□□□□□ -0.37
SS18-207ENST00000577636 TTLL12Q14166 644 aaPredicted RBP12.72□□□□□ -0.37
SS18-207ENST00000577636 RSBN1LQ6PCB5 846 aaPredicted RBP12.72□□□□□ -0.37
SS18-207ENST00000577636 FBXW7Q969H0 707 aa12.72□□□□□ -0.37
SS18-207ENST00000577636 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.72□□□□□ -0.37
SS18-207ENST00000577636 DBF4Q9UBU7 674 aaPredicted RBP12.72□□□□□ -0.37
SS18-207ENST00000577636 HPS5Q9UPZ3 1129 aa12.72□□□□□ -0.37
SS18-207ENST00000577636 DUOX1Q9NRD9 1551 aa12.72□□□□□ -0.37
SS18-207ENST00000577636 ANKRD36CQ5JPF3 1778 aa12.71□□□□□ -0.37
SS18-207ENST00000577636 HOXB7P09629 217 aa12.71□□□□□ -0.37
SS18-207ENST00000577636 SLC4A2P04920 1241 aa12.7□□□□□ -0.38
SS18-207ENST00000577636 USP17L8P0C7I0 530 aa12.7□□□□□ -0.38
SS18-207ENST00000577636 REM2Q8IYK8 340 aaPredicted RBP12.7□□□□□ -0.38
SS18-207ENST00000577636 AGBL3Q8NEM8 1001 aa12.7□□□□□ -0.38
SS18-207ENST00000577636 ZNF296Q8WUU4 475 aaPredicted RBP12.7□□□□□ -0.38
SS18-207ENST00000577636 MYD88Q99836 296 aa12.7□□□□□ -0.38
SS18-207ENST00000577636 RWDD1Q9H446 243 aaPredicted RBP12.7□□□□□ -0.38
SS18-207ENST00000577636 MYOZ2Q9NPC6 264 aa12.7□□□□□ -0.38
SS18-207ENST00000577636 HYPKQ9NX55 129 aa12.7□□□□□ -0.38
SS18-207ENST00000577636 RLBP1P12271 317 aa12.69□□□□□ -0.38
SS18-207ENST00000577636 ZNF280AP59817 542 aaPredicted RBP12.69□□□□□ -0.38
SS18-207ENST00000577636 PRKG1Q13976 671 aa12.69□□□□□ -0.38
SS18-207ENST00000577636 CCDC152Q4G0S7 254 aa12.69□□□□□ -0.38
SS18-207ENST00000577636 PRPF38BQ5VTL8 546 aaKnown RBP12.69□□□□□ -0.38
SS18-207ENST00000577636 TMEM57Q8N5G2 664 aa12.69□□□□□ -0.38
SS18-207ENST00000577636 ZBTB38Q8NAP3 1195 aaPredicted RBP12.69□□□□□ -0.38
SS18-207ENST00000577636 PODXL2Q9NZ53 605 aa12.69□□□□□ -0.38
SS18-207ENST00000577636 USP17L3A6NCW0 530 aa12.68□□□□□ -0.38
SS18-207ENST00000577636 USP17L4A6NCW7 530 aa12.68□□□□□ -0.38
SS18-207ENST00000577636 PKN2Q16513 984 aaKnown RBP12.68□□□□□ -0.38
SS18-207ENST00000577636 USP17L1Q7RTZ2 530 aa12.68□□□□□ -0.38
SS18-207ENST00000577636 ANKRD18AQ8IVF6 992 aa12.68□□□□□ -0.38
SS18-207ENST00000577636 MXD3Q9BW11 206 aa12.68□□□□□ -0.38
SS18-207ENST00000577636 PHAXQ9H814 394 aaKnown RBP12.68□□□□□ -0.38
SS18-207ENST00000577636 COL4A1P02462 1669 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 WTIPA6NIX2 430 aaPredicted RBP12.67□□□□□ -0.38
SS18-207ENST00000577636 GPR25O00155 361 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 PDE8AO60658 829 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 HSP90B1P14625 803 aaKnown RBP12.67□□□□□ -0.38
SS18-207ENST00000577636 ATP2B4P23634 1241 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 FKBP1BP68106 108 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 TRIM28Q13263 835 aaKnown RBP12.67□□□□□ -0.38
SS18-207ENST00000577636 NBPF9Q3BBW0 867 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 TNNQ9UQP3 1299 aa12.67□□□□□ -0.38
SS18-207ENST00000577636 AKAP11Q9UKA4 1901 aa12.66□□□□□ -0.38
SS18-207ENST00000577636 NF2P35240 595 aa12.66□□□□□ -0.38
SS18-207ENST00000577636 GMLQ99445 158 aa12.66□□□□□ -0.38
SS18-207ENST00000577636 DDX60Q8IY21 1712 aaKnown RBP12.65□□□□□ -0.38
SS18-207ENST00000577636 XDHP47989 1333 aa12.65□□□□□ -0.38
SS18-207ENST00000577636 CCT4P50991 539 aaKnown RBP12.65□□□□□ -0.38
SS18-207ENST00000577636 PODNQ7Z5L7 613 aa12.65□□□□□ -0.38
SS18-207ENST00000577636 OGFOD1Q8N543 542 aa12.65□□□□□ -0.38
SS18-207ENST00000577636 CWC25Q9NXE8 425 aaPredicted RBP12.65□□□□□ -0.38
SS18-207ENST00000577636 LRRC37AA6NMS7 1700 aa12.65□□□□□ -0.38
SS18-207ENST00000577636 PITPNM2Q9BZ72 1349 aa12.64□□□□□ -0.39
SS18-207ENST00000577636 PCCAP05165 728 aaPredicted RBP12.64□□□□□ -0.39
SS18-207ENST00000577636 TM4SF4P48230 202 aa12.64□□□□□ -0.39
SS18-207ENST00000577636 FKBP5Q13451 457 aaPredicted RBP12.64□□□□□ -0.39
SS18-207ENST00000577636 INTS3Q68E01 1043 aaKnown RBP12.64□□□□□ -0.39
SS18-207ENST00000577636 FBXO46Q6PJ61 603 aaPredicted RBP12.64□□□□□ -0.39
SS18-207ENST00000577636 ARMC9Q7Z3E5 817 aa12.64□□□□□ -0.39
SS18-207ENST00000577636 CCDC191Q8NCU4 936 aa12.64□□□□□ -0.39
SS18-207ENST00000577636 R3HDMLQ9H3Y0 253 aa12.64□□□□□ -0.39
SS18-207ENST00000577636 TNRC18O15417 2968 aaPredicted RBP12.63□□□□□ -0.39
SS18-207ENST00000577636 SCN9AQ15858 1988 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 WNT10BO00744 389 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 FKTNO75072 461 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms