RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 RNF113AO15541 343 aaKnown RBP8.47□□□□□ -1.05
SMG1-215ENST00000568239 BCAMP50895 628 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 NECTIN1Q15223 517 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 ADCK5Q3MIX3 580 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 IQSEC3Q9UPP2 1182 aaPredicted RBP8.47□□□□□ -1.05
SMG1-215ENST00000568239 MED23Q9ULK4 1368 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 CARMIL3Q8ND23 1372 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 RGL2O15211 777 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 FGFR2P21802 821 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 RPS8P62241 208 aaKnown RBP8.47□□□□□ -1.05
SMG1-215ENST00000568239 SLC10A5Q5PT55 438 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 VPS37DQ86XT2 251 aa8.47□□□□□ -1.05
SMG1-215ENST00000568239 RTL9Q8NET4 1388 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 WTIPA6NIX2 430 aaPredicted RBP8.46□□□□□ -1.05
SMG1-215ENST00000568239 SLC27A2O14975 620 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 UQCRFS1P1P0C7P4 283 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 GYS1P13807 737 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 SSFA2P28290 1259 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 VPS53Q5VIR6 699 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 TMX3Q96JJ7 454 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.46□□□□□ -1.05
SMG1-215ENST00000568239 HELLSQ9NRZ9 838 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 BSDC1Q9NW68 430 aaPredicted RBP8.46□□□□□ -1.05
SMG1-215ENST00000568239 C4AP0C0L4 1744 aa8.46□□□□□ -1.05
SMG1-215ENST00000568239 CYP2E1P05181 493 aaPredicted RBP8.46□□□□□ -1.06
SMG1-215ENST00000568239 MCM2P49736 904 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 SLC9C2Q5TAH2 1124 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 MINPP1Q9UNW1 487 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 RFX7Q2KHR2 1363 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 GYG1P46976 350 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 TTF1Q15361 905 aaPredicted RBP8.46□□□□□ -1.06
SMG1-215ENST00000568239 ZMYM1Q5SVZ6 1142 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 ZGPATQ8N5A5 531 aaKnown RBP8.46□□□□□ -1.06
SMG1-215ENST00000568239 OSBP2Q969R2 916 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 HMG20BQ9P0W2 317 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 CYP46A1Q9Y6A2 500 aa8.46□□□□□ -1.06
SMG1-215ENST00000568239 MAST3O60307 1309 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 GOLGB1Q14789 3259 aaKnown RBP8.45□□□□□ -1.06
SMG1-215ENST00000568239 M0R2C6 588 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 SERPINB2P05120 415 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 RASGRF1Q13972 1273 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 SPATA5Q8NB90 893 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 TCEANC2Q96MN5 208 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 PIH1D3Q9NQM4 214 aaKnown RBP8.45□□□□□ -1.06
SMG1-215ENST00000568239 PDRG1Q9NUG6 133 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 TAF6LQ9Y6J9 622 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 LAMB2P55268 1798 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 COL4A1P02462 1669 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 ZFYP08048 801 aaPredicted RBP8.45□□□□□ -1.06
SMG1-215ENST00000568239 PSMA5P28066 241 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 AK2P54819 239 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 ST5P78524 1137 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 CAVIN4Q5BKX8 364 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 PRR5LQ6MZQ0 368 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 POTEAQ6S8J7 498 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 U3KPZ7 1027 aaPredicted RBP8.45□□□□□ -1.06
SMG1-215ENST00000568239 UBR3Q6ZT12 1888 aa8.45□□□□□ -1.06
SMG1-215ENST00000568239 PLSCR1O15162 318 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 HSPD1P10809 573 aaKnown RBP8.44□□□□□ -1.06
SMG1-215ENST00000568239 ARID4AP29374 1257 aaPredicted RBP8.44□□□□□ -1.06
SMG1-215ENST00000568239 ZNF827Q17R98 1081 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 ZSCAN25Q6NSZ9 544 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 BLOC1S2Q6QNY1 142 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 RPGRQ92834 1020 aaKnown RBP8.44□□□□□ -1.06
SMG1-215ENST00000568239 PUS7LQ9H0K6 701 aaKnown RBP8.44□□□□□ -1.06
SMG1-215ENST00000568239 ABCF2Q9UG63 623 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 AKAP11Q9UKA4 1901 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 RUFY3Q7L099 469 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 APPBP2Q92624 585 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 ZNF512BQ96KM6 892 aaPredicted RBP8.44□□□□□ -1.06
SMG1-215ENST00000568239 ANKIB1Q9P2G1 1089 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 RGS17Q9UGC6 210 aaPredicted RBP8.44□□□□□ -1.06
SMG1-215ENST00000568239 LRP5O75197 1615 aa8.44□□□□□ -1.06
SMG1-215ENST00000568239 APPP05067 770 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 CYP21A2P08686 494 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 GNL3LQ9NVN8 582 aaKnown RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 LRP2BPQ9P2M1 347 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 WWC3Q9ULE0 1092 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 ZNF532Q9HCE3 1301 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 MYO5AQ9Y4I1 1855 aaKnown RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 GPAA1O43292 621 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 HMGB2P26583 209 aaKnown RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 FGD1P98174 961 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 MAP3K12Q12852 859 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 COL9A3Q14050 684 aaPredicted RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 UBE4AQ14139 1066 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 TPRNQ4KMQ1 711 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 COL23A1Q86Y22 540 aaPredicted RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 MAGEB6Q8N7X4 407 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 ZSWIM6Q9HCJ5 1215 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 CASZ1Q86V15 1759 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 KLRK1P26718 216 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 TM4SF1P30408 202 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 ADD2P35612 726 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 HAND2P61296 217 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 FOXD4L5Q5VV16 416 aaPredicted RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 MSL1Q68DK7 614 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 TTLL5Q6EMB2 1281 aa8.43□□□□□ -1.06
SMG1-215ENST00000568239 FOXD4L4Q8WXT5 416 aaPredicted RBP8.43□□□□□ -1.06
SMG1-215ENST00000568239 IL17RAQ96F46 866 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms