RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 XAGE3Q8WTP9 111 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 FAM89AQ96GI7 184 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 WNK4Q96J92 1243 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 GGA1Q9UJY5 639 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 UNC80Q8N2C7 3258 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 WTIPA6NIX2 430 aaPredicted RBP21.96■■□□□ 1.11
CLK3-217ENST00000566126 MYCP01106 439 aaPredicted RBP21.96■■□□□ 1.11
CLK3-217ENST00000566126 CLMNQ96JQ2 1002 aa21.96■■□□□ 1.11
CLK3-217ENST00000566126 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.96■■□□□ 1.11
CLK3-217ENST00000566126 ANKIB1Q9P2G1 1089 aa21.96■■□□□ 1.11
CLK3-217ENST00000566126 SOX1O00570 391 aaPredicted RBP21.95■■□□□ 1.1
CLK3-217ENST00000566126 MXD3Q9BW11 206 aa21.95■■□□□ 1.1
CLK3-217ENST00000566126 SASH1O94885 1247 aa21.94■■□□□ 1.1
CLK3-217ENST00000566126 MAP3K11Q16584 847 aa21.94■■□□□ 1.1
CLK3-217ENST00000566126 DPF3Q92784 378 aa21.94■■□□□ 1.1
CLK3-217ENST00000566126 PTPN18Q99952 460 aa21.94■■□□□ 1.1
CLK3-217ENST00000566126 SSC5DA1L4H1 1573 aa21.93■■□□□ 1.1
CLK3-217ENST00000566126 PODNQ7Z5L7 613 aa21.93■■□□□ 1.1
CLK3-217ENST00000566126 GJA5P36382 358 aa21.92■■□□□ 1.1
CLK3-217ENST00000566126 DACT2Q5SW24 774 aa21.92■■□□□ 1.1
CLK3-217ENST00000566126 SHISA4Q96DD7 197 aa21.92■■□□□ 1.1
CLK3-217ENST00000566126 SEC31BQ9NQW1 1179 aa21.92■■□□□ 1.1
CLK3-217ENST00000566126 RTL5Q5HYW3 569 aaPredicted RBP21.91■■□□□ 1.1
CLK3-217ENST00000566126 OTUD7BQ6GQQ9 843 aa21.91■■□□□ 1.1
CLK3-217ENST00000566126 APOBEC3FQ8IUX4 373 aaKnown RBP21.91■■□□□ 1.1
CLK3-217ENST00000566126 LRCH3Q96II8 777 aa21.91■■□□□ 1.1
CLK3-217ENST00000566126 ISCA1Q9BUE6 129 aa21.91■■□□□ 1.1
CLK3-217ENST00000566126 ZSWIM8A7E2V4 1837 aa21.9■■□□□ 1.1
CLK3-217ENST00000566126 OGFOD1Q8N543 542 aa21.9■■□□□ 1.1
CLK3-217ENST00000566126 SH3TC2Q8TF17 1288 aa21.9■■□□□ 1.1
CLK3-217ENST00000566126 TESPA1A2RU30 521 aaPredicted RBP21.89■■□□□ 1.09
CLK3-217ENST00000566126 IRS4O14654 1257 aaPredicted RBP21.88■■□□□ 1.09
CLK3-217ENST00000566126 ZBED3Q96IU2 234 aaPredicted RBP21.88■■□□□ 1.09
CLK3-217ENST00000566126 COL1A1P02452 1464 aaPredicted RBP21.88■■□□□ 1.09
CLK3-217ENST00000566126 ATP5J2-PTCD1G3V325 749 aa21.87■■□□□ 1.09
CLK3-217ENST00000566126 DEFB129Q9H1M3 183 aa21.87■■□□□ 1.09
CLK3-217ENST00000566126 TSPYL4Q9UJ04 414 aa21.87■■□□□ 1.09
CLK3-217ENST00000566126 XDHP47989 1333 aa21.86■■□□□ 1.09
CLK3-217ENST00000566126 A0A1W2PPC1 479 aa21.86■■□□□ 1.09
CLK3-217ENST00000566126 UBE2Q1Q7Z7E8 422 aa21.86■■□□□ 1.09
CLK3-217ENST00000566126 COL25A1Q9BXS0 654 aaPredicted RBP21.86■■□□□ 1.09
CLK3-217ENST00000566126 MYO3BQ8WXR4 1341 aa21.85■■□□□ 1.09
CLK3-217ENST00000566126 UNCXA6NJT0 531 aa21.85■■□□□ 1.09
CLK3-217ENST00000566126 ARHGEF6Q15052 776 aa21.85■■□□□ 1.09
CLK3-217ENST00000566126 ZBTB7BO15156 539 aaPredicted RBP21.84■■□□□ 1.09
CLK3-217ENST00000566126 PPP1R12BO60237 982 aaPredicted RBP21.84■■□□□ 1.09
CLK3-217ENST00000566126 OTOFQ9HC10 1997 aa21.84■■□□□ 1.09
CLK3-217ENST00000566126 ATP2B4P23634 1241 aa21.83■■□□□ 1.09
CLK3-217ENST00000566126 MTFR1Q15390 333 aa21.83■■□□□ 1.09
CLK3-217ENST00000566126 STRIP1Q5VSL9 837 aa21.83■■□□□ 1.09
CLK3-217ENST00000566126 PLBD2Q8NHP8 589 aa21.83■■□□□ 1.09
CLK3-217ENST00000566126 FBXW7Q969H0 707 aa21.83■■□□□ 1.09
CLK3-217ENST00000566126 ECM29Q5VYK3 1845 aa21.83■■□□□ 1.08
CLK3-217ENST00000566126 MMP14P50281 582 aa21.82■■□□□ 1.08
CLK3-217ENST00000566126 NFE2L2Q16236 605 aa21.82■■□□□ 1.08
CLK3-217ENST00000566126 MS4A4AQ96JQ5 239 aa21.82■■□□□ 1.08
CLK3-217ENST00000566126 PLEKHF1Q96S99 279 aa21.82■■□□□ 1.08
CLK3-217ENST00000566126 ARHGAP39Q9C0H5 1083 aa21.82■■□□□ 1.08
CLK3-217ENST00000566126 MED23Q9ULK4 1368 aa21.82■■□□□ 1.08
CLK3-217ENST00000566126 PPP2R1AP30153 589 aa21.81■■□□□ 1.08
CLK3-217ENST00000566126 HTATIP2Q9BUP3 242 aa21.81■■□□□ 1.08
CLK3-217ENST00000566126 USP2O75604 605 aaPredicted RBP21.8■■□□□ 1.08
CLK3-217ENST00000566126 TAF1CQ15572 869 aaPredicted RBP21.8■■□□□ 1.08
CLK3-217ENST00000566126 ANKRD13DQ6ZTN6 518 aa21.8■■□□□ 1.08
CLK3-217ENST00000566126 KIAA0825Q8IV33 1275 aa21.8■■□□□ 1.08
CLK3-217ENST00000566126 NR2E3Q9Y5X4 410 aa21.8■■□□□ 1.08
CLK3-217ENST00000566126 VCANP13611 3396 aa21.79■■□□□ 1.08
CLK3-217ENST00000566126 TRIM28Q13263 835 aaKnown RBP21.79■■□□□ 1.08
CLK3-217ENST00000566126 BRI3BPQ8WY22 251 aa21.79■■□□□ 1.08
CLK3-217ENST00000566126 ZFYVE28Q9HCC9 887 aa21.79■■□□□ 1.08
CLK3-217ENST00000566126 CHPF2Q9P2E5 772 aa21.79■■□□□ 1.08
CLK3-217ENST00000566126 NEFMP07197 916 aa21.78■■□□□ 1.08
CLK3-217ENST00000566126 IREB2P48200 963 aaKnown RBP21.78■■□□□ 1.08
CLK3-217ENST00000566126 NBPF12Q5TAG4 269 aaPredicted RBP21.78■■□□□ 1.08
CLK3-217ENST00000566126 ANKRD13AQ8IZ07 590 aa21.78■■□□□ 1.08
CLK3-217ENST00000566126 PPP2R3BQ9Y5P8 575 aa21.78■■□□□ 1.08
CLK3-217ENST00000566126 TXNRD3Q86VQ6 643 aa21.77■■□□□ 1.08
CLK3-217ENST00000566126 ZBTB38Q8NAP3 1195 aaPredicted RBP21.77■■□□□ 1.08
CLK3-217ENST00000566126 OPTNQ96CV9 577 aa21.77■■□□□ 1.08
CLK3-217ENST00000566126 CCDC85AQ96PX6 553 aaPredicted RBP21.77■■□□□ 1.08
CLK3-217ENST00000566126 STXBP5LQ9Y2K9 1186 aa21.77■■□□□ 1.08
CLK3-217ENST00000566126 SPEF2Q9C093 1822 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 GJA8P48165 433 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 SUPT20HL1Q3ZLR7 823 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 CCDC152Q4G0S7 254 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 ANKRD18AQ8IVF6 992 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 FAM43AQ8N2R8 423 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 NKX2-3Q8TAU0 364 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 COA1Q9GZY4 146 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 ELP3Q9H9T3 547 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 ZNF804BA4D1E1 1349 aa21.76■■□□□ 1.07
CLK3-217ENST00000566126 SPTBN5Q9NRC6 3674 aaKnown RBP21.76■■□□□ 1.07
CLK3-217ENST00000566126 LACTBP83111 547 aaPredicted RBP21.75■■□□□ 1.07
CLK3-217ENST00000566126 KRT24Q2M2I5 525 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 TTLL5Q6EMB2 1281 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 GPR153Q6NV75 609 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 Q7L0L9 218 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 DEFB123Q8N688 67 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 CNKSR2Q8WXI2 1034 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 STAP2Q9UGK3 403 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms