RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 POLD1P28340 1107 aa37.16■■■■□ 3.54
CTCF-203ENST00000566078 STYK1Q6J9G0 422 aa37.16■■■■□ 3.54
CTCF-203ENST00000566078 KIAA1551Q9HCM1 1747 aa37.16■■■■□ 3.54
CTCF-203ENST00000566078 CHRNA5P30532 468 aa37.15■■■■□ 3.54
CTCF-203ENST00000566078 EDC3Q96F86 508 aaKnown RBP37.15■■■■□ 3.54
CTCF-203ENST00000566078 ZNF804BA4D1E1 1349 aa37.15■■■■□ 3.54
CTCF-203ENST00000566078 ZNF512BQ96KM6 892 aaPredicted RBP37.14■■■■□ 3.54
CTCF-203ENST00000566078 CHMLP26374 656 aa37.14■■■■□ 3.54
CTCF-203ENST00000566078 ARID4AP29374 1257 aaPredicted RBP37.14■■■■□ 3.54
CTCF-203ENST00000566078 UQCRFS1P1P0C7P4 283 aa37.13■■■■□ 3.53
CTCF-203ENST00000566078 GPSM2P81274 684 aa37.13■■■■□ 3.53
CTCF-203ENST00000566078 SCARF1Q14162 830 aa37.13■■■■□ 3.53
CTCF-203ENST00000566078 PAG1Q9NWQ8 432 aa37.13■■■■□ 3.53
CTCF-203ENST00000566078 DOCK2Q92608 1830 aa37.12■■■■□ 3.53
CTCF-203ENST00000566078 MFAP1P55081 439 aaKnown RBP37.12■■■■□ 3.53
CTCF-203ENST00000566078 FSD1Q9BTV5 496 aa37.12■■■■□ 3.53
CTCF-203ENST00000566078 GOLIM4O00461 696 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 MCAMP43121 646 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 BCAMP50895 628 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 SP8Q8IXZ3 490 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 SNRKQ9NRH2 765 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 LEMD3Q9Y2U8 911 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 ATP6V0A2Q9Y487 856 aa37.11■■■■□ 3.53
CTCF-203ENST00000566078 FKBP4Q02790 459 aaKnown RBP eCLIP37.1■■■■□ 3.53
CTCF-203ENST00000566078 KLRK1P26718 216 aa37.09■■■■□ 3.53
CTCF-203ENST00000566078 GYG1P46976 350 aa37.09■■■■□ 3.53
CTCF-203ENST00000566078 NSFL1CQ9UNZ2 370 aaKnown RBP37.09■■■■□ 3.53
CTCF-203ENST00000566078 CAVIN4Q5BKX8 364 aa37.08■■■■□ 3.53
CTCF-203ENST00000566078 PI16Q6UXB8 463 aa37.08■■■■□ 3.53
CTCF-203ENST00000566078 RBM19Q9Y4C8 960 aaKnown RBP37.08■■■■□ 3.53
CTCF-203ENST00000566078 ZAP70P43403 619 aa37.07■■■■□ 3.53
CTCF-203ENST00000566078 RFX7Q2KHR2 1363 aa37.07■■■■□ 3.52
CTCF-203ENST00000566078 CNKSR1Q969H4 720 aa37.07■■■■□ 3.52
CTCF-203ENST00000566078 UPF2Q9HAU5 1272 aaKnown RBP37.07■■■■□ 3.52
CTCF-203ENST00000566078 DIAPH3Q9NSV4 1193 aa37.07■■■■□ 3.52
CTCF-203ENST00000566078 PODXL2Q9NZ53 605 aa37.07■■■■□ 3.52
CTCF-203ENST00000566078 DUOX1Q9NRD9 1551 aa37.06■■■■□ 3.52
CTCF-203ENST00000566078 BRCA1P38398 1863 aaKnown RBP37.06■■■■□ 3.52
CTCF-203ENST00000566078 ATP2B4P23634 1241 aa37.06■■■■□ 3.52
CTCF-203ENST00000566078 PRPF40BQ6NWY9 871 aaKnown RBP37.06■■■■□ 3.52
CTCF-203ENST00000566078 GGA1Q9UJY5 639 aa37.06■■■■□ 3.52
CTCF-203ENST00000566078 IRS2Q9Y4H2 1338 aa37.06■■■■□ 3.52
CTCF-203ENST00000566078 UFL1O94874 794 aa37.05■■■■□ 3.52
CTCF-203ENST00000566078 VPS37DQ86XT2 251 aa37.05■■■■□ 3.52
CTCF-203ENST00000566078 KBTBD3Q8NAB2 608 aa37.05■■■■□ 3.52
CTCF-203ENST00000566078 FAM84BQ96KN1 310 aaPredicted RBP37.05■■■■□ 3.52
CTCF-203ENST00000566078 ESYT1Q9BSJ8 1104 aa37.05■■■■□ 3.52
CTCF-203ENST00000566078 EIF5BO60841 1220 aaKnown RBP37.04■■■■□ 3.52
CTCF-203ENST00000566078 RASGRF1Q13972 1273 aa37.04■■■■□ 3.52
CTCF-203ENST00000566078 ANTXR1Q9H6X2 564 aa37.04■■■■□ 3.52
CTCF-203ENST00000566078 GNL3LQ9NVN8 582 aaKnown RBP37.04■■■■□ 3.52
CTCF-203ENST00000566078 HIP1O00291 1037 aa37.03■■■■□ 3.52
CTCF-203ENST00000566078 HMG20BQ9P0W2 317 aa37.03■■■■□ 3.52
CTCF-203ENST00000566078 SPATA5Q8NB90 893 aa37.03■■■■□ 3.52
CTCF-203ENST00000566078 SGIP1Q9BQI5 828 aa37.03■■■■□ 3.52
CTCF-203ENST00000566078 TMX4Q9H1E5 349 aaPredicted RBP37.03■■■■□ 3.52
CTCF-203ENST00000566078 OLFM4Q6UX06 510 aa37.02■■■■□ 3.52
CTCF-203ENST00000566078 FBXO33Q7Z6M2 555 aa37.02■■■■□ 3.52
CTCF-203ENST00000566078 GPR101Q96P66 508 aaPredicted RBP37.01■■■■□ 3.52
CTCF-203ENST00000566078 CWC27Q6UX04 472 aaKnown RBP37■■■■□ 3.51
CTCF-203ENST00000566078 TXNRD3Q86VQ6 643 aa37■■■■□ 3.51
CTCF-203ENST00000566078 TBC1D16Q8TBP0 767 aa37■■■■□ 3.51
CTCF-203ENST00000566078 IQSEC3Q9UPP2 1182 aaPredicted RBP37■■■■□ 3.51
CTCF-203ENST00000566078 COL1A1P02452 1464 aaPredicted RBP37■■■■□ 3.51
CTCF-203ENST00000566078 DPEP1P16444 411 aa36.99■■■■□ 3.51
CTCF-203ENST00000566078 HIBADHP31937 336 aaKnown RBP36.99■■■■□ 3.51
CTCF-203ENST00000566078 CYP2E1P05181 493 aaPredicted RBP36.99■■■■□ 3.51
CTCF-203ENST00000566078 MPNDQ8N594 471 aa36.99■■■■□ 3.51
CTCF-203ENST00000566078 POLLQ9UGP5 575 aa36.99■■■■□ 3.51
CTCF-203ENST00000566078 A0A0G2JLW4 131 aa36.98■■■■□ 3.51
CTCF-203ENST00000566078 TTF1Q15361 905 aaPredicted RBP36.98■■■■□ 3.51
CTCF-203ENST00000566078 C15orf52Q6ZUT6 534 aaKnown RBP36.98■■■■□ 3.51
CTCF-203ENST00000566078 RUFY2Q8WXA3 655 aa36.98■■■■□ 3.51
CTCF-203ENST00000566078 PTGER2P43116 358 aa36.97■■■■□ 3.51
CTCF-203ENST00000566078 NMIQ13287 307 aaPredicted RBP36.97■■■■□ 3.51
CTCF-203ENST00000566078 MED23Q9ULK4 1368 aa36.97■■■■□ 3.51
CTCF-203ENST00000566078 C6orf229H3BNL8 230 aa36.96■■■■□ 3.51
CTCF-203ENST00000566078 DPP8Q6V1X1 898 aaPredicted RBP36.96■■■■□ 3.51
CTCF-203ENST00000566078 IL25Q9H293 177 aa36.96■■■■□ 3.51
CTCF-203ENST00000566078 ZNF219Q9P2Y4 722 aaPredicted RBP36.96■■■■□ 3.51
CTCF-203ENST00000566078 REC8O95072 547 aa36.96■■■■□ 3.51
CTCF-203ENST00000566078 FAM227BQ96M60 508 aa36.96■■■■□ 3.51
CTCF-203ENST00000566078 CCDC88AQ3V6T2 1871 aa36.95■■■■□ 3.51
CTCF-203ENST00000566078 SGSM2O43147 1006 aa36.95■■■■□ 3.51
CTCF-203ENST00000566078 ZNF804AQ7Z570 1209 aa36.95■■■■□ 3.51
CTCF-203ENST00000566078 TICAM2Q86XR7 235 aa36.95■■■■□ 3.51
CTCF-203ENST00000566078 PIH1D3Q9NQM4 214 aaKnown RBP36.95■■■■□ 3.51
CTCF-203ENST00000566078 SEMA3EO15041 775 aa36.94■■■■□ 3.5
CTCF-203ENST00000566078 KCNA3P22001 575 aa36.94■■■■□ 3.5
CTCF-203ENST00000566078 TGFB2P61812 414 aa36.94■■■■□ 3.5
CTCF-203ENST00000566078 TTLL6Q8N841 843 aa36.94■■■■□ 3.5
CTCF-203ENST00000566078 DENND2AQ9ULE3 1009 aa36.94■■■■□ 3.5
CTCF-203ENST00000566078 A0A0D9SFI3 127 aa36.93■■■■□ 3.5
CTCF-203ENST00000566078 FRAT2O75474 233 aaPredicted RBP36.92■■■■□ 3.5
CTCF-203ENST00000566078 TBC1D32Q96NH3 1257 aa36.92■■■■□ 3.5
CTCF-203ENST00000566078 C22orf23Q9BZE7 217 aa36.92■■■■□ 3.5
CTCF-203ENST00000566078 PPP1R1BQ9UD71 204 aaPredicted RBP36.92■■■■□ 3.5
CTCF-203ENST00000566078 MAST2Q6P0Q8 1798 aa36.92■■■■□ 3.5
CTCF-203ENST00000566078 RAD50Q92878 1312 aa36.92■■■■□ 3.5
CTCF-203ENST00000566078 CHD4Q14839 1912 aa36.92■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms