RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 H7C1W4 665 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 MAP2K2P36507 400 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 HHIPL1Q96JK4 782 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 ZIC5Q96T25 663 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 CDC5LQ99459 802 aaKnown RBP14.92□□□□□ -0.02
USP3-220ENST00000561381 BEGAINQ9BUH8 593 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 MINPP1Q9UNW1 487 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 SPEF2Q9C093 1822 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 FANCIQ9NVI1 1328 aa14.92□□□□□ -0.02
USP3-220ENST00000561381 ATP2B4P23634 1241 aa14.91□□□□□ -0.02
USP3-220ENST00000561381 FLIIQ13045 1269 aa14.91□□□□□ -0.02
USP3-220ENST00000561381 RSBN1LQ6PCB5 846 aaPredicted RBP14.91□□□□□ -0.02
USP3-220ENST00000561381 DCPSQ96C86 337 aaKnown RBP14.91□□□□□ -0.02
USP3-220ENST00000561381 BSDC1Q9NW68 430 aaPredicted RBP14.91□□□□□ -0.02
USP3-220ENST00000561381 GGA3Q9NZ52 723 aa14.91□□□□□ -0.02
USP3-220ENST00000561381 MYH3P11055 1940 aa14.91□□□□□ -0.02
USP3-220ENST00000561381 CASP7P55210 303 aa14.9□□□□□ -0.02
USP3-220ENST00000561381 HUNKP57058 714 aa14.9□□□□□ -0.02
USP3-220ENST00000561381 GCKRQ14397 625 aa14.9□□□□□ -0.02
USP3-220ENST00000561381 GMLQ99445 158 aa14.9□□□□□ -0.02
USP3-220ENST00000561381 ANP32CO43423 234 aa14.89□□□□□ -0.03
USP3-220ENST00000561381 VAMP4O75379 141 aa14.89□□□□□ -0.03
USP3-220ENST00000561381 ZNF280AP59817 542 aaPredicted RBP14.89□□□□□ -0.03
USP3-220ENST00000561381 FKBP5Q13451 457 aaPredicted RBP14.89□□□□□ -0.03
USP3-220ENST00000561381 AGBL3Q8NEM8 1001 aa14.89□□□□□ -0.03
USP3-220ENST00000561381 MXD3Q9BW11 206 aa14.89□□□□□ -0.03
USP3-220ENST00000561381 GBA2Q9HCG7 927 aaPredicted RBP14.89□□□□□ -0.03
USP3-220ENST00000561381 FARP1Q9Y4F1 1045 aaPredicted RBP14.89□□□□□ -0.03
USP3-220ENST00000561381 PSME4Q14997 1843 aa14.89□□□□□ -0.03
USP3-220ENST00000561381 USP17L3A6NCW0 530 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 USP17L4A6NCW7 530 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 CCT4P50991 539 aaKnown RBP14.88□□□□□ -0.03
USP3-220ENST00000561381 EXOSC9Q06265 439 aaKnown RBP14.88□□□□□ -0.03
USP3-220ENST00000561381 SCARF1Q14162 830 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 FAM161AQ3B820 660 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 USP17L1Q7RTZ2 530 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 PODNQ7Z5L7 613 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 TXNRD3Q86VQ6 643 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 DNAAF4Q8WXU2 420 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 PLA2G12BQ9BX93 195 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 SCAF8Q9UPN6 1271 aaKnown RBP14.88□□□□□ -0.03
USP3-220ENST00000561381 ZNF609O15014 1411 aa14.88□□□□□ -0.03
USP3-220ENST00000561381 MED23Q9ULK4 1368 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 FAM155AB1AL88 458 aaPredicted RBP14.87□□□□□ -0.03
USP3-220ENST00000561381 USP17L8P0C7I0 530 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 ITGA6P23229 1130 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 KLRK1P26718 216 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 BRPF1P55201 1214 aaPredicted RBP14.87□□□□□ -0.03
USP3-220ENST00000561381 ANGEL2Q5VTE6 544 aaKnown RBP14.87□□□□□ -0.03
USP3-220ENST00000561381 RGMBQ6NW40 437 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 WDR63Q8IWG1 891 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 SULF1Q8IWU6 871 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 C2orf69Q8N8R5 385 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 ABHD8Q96I13 439 aa14.87□□□□□ -0.03
USP3-220ENST00000561381 ZNF316A6NFI3 1004 aaPredicted RBP14.86□□□□□ -0.03
USP3-220ENST00000561381 F6X3S4 739 aa14.86□□□□□ -0.03
USP3-220ENST00000561381 IGHMBP2P38935 993 aaKnown RBP14.86□□□□□ -0.03
USP3-220ENST00000561381 NOGQ13253 232 aa14.86□□□□□ -0.03
USP3-220ENST00000561381 LINS1Q8NG48 757 aa14.86□□□□□ -0.03
USP3-220ENST00000561381 CDCA5Q96FF9 252 aa14.86□□□□□ -0.03
USP3-220ENST00000561381 MYOZ2Q9NPC6 264 aa14.86□□□□□ -0.03
USP3-220ENST00000561381 CSF1RP07333 972 aa14.85□□□□□ -0.03
USP3-220ENST00000561381 DACT2Q5SW24 774 aa14.85□□□□□ -0.03
USP3-220ENST00000561381 FBXW7Q969H0 707 aa14.85□□□□□ -0.03
USP3-220ENST00000561381 MYH16Q9H6N6 1097 aa14.85□□□□□ -0.03
USP3-220ENST00000561381 CASP8AP2Q9UKL3 1982 aa14.85□□□□□ -0.03
USP3-220ENST00000561381 CA12O43570 354 aa14.84□□□□□ -0.03
USP3-220ENST00000561381 ZNF157P51786 506 aaPredicted RBP14.84□□□□□ -0.03
USP3-220ENST00000561381 COA1Q9GZY4 146 aa14.84□□□□□ -0.03
USP3-220ENST00000561381 LEMD3Q9Y2U8 911 aa14.84□□□□□ -0.03
USP3-220ENST00000561381 ZNF646O15015 1829 aaPredicted RBP14.84□□□□□ -0.03
USP3-220ENST00000561381 ZNF804BA4D1E1 1349 aa14.84□□□□□ -0.03
USP3-220ENST00000561381 CACNA1FO60840 1977 aa14.84□□□□□ -0.03
USP3-220ENST00000561381 SNAP23O00161 211 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 ZEB1P37275 1124 aaPredicted RBP14.83□□□□□ -0.04
USP3-220ENST00000561381 FOXO4P98177 505 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 KIF23Q02241 960 aaPredicted RBP14.83□□□□□ -0.04
USP3-220ENST00000561381 NBPF9Q3BBW0 867 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 BEND3Q5T5X7 828 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 PRAMEF18Q5VWM3 479 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 FAM9BQ8IZU0 186 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 MPHOSPH8Q99549 860 aa14.83□□□□□ -0.04
USP3-220ENST00000561381 CHRNDQ07001 517 aa14.82□□□□□ -0.04
USP3-220ENST00000561381 STRIP1Q5VSL9 837 aa14.82□□□□□ -0.04
USP3-220ENST00000561381 MOB2Q70IA6 237 aa14.82□□□□□ -0.04
USP3-220ENST00000561381 HELBQ8NG08 1087 aaPredicted RBP14.82□□□□□ -0.04
USP3-220ENST00000561381 CCDC102AQ96A19 550 aa14.82□□□□□ -0.04
USP3-220ENST00000561381 ANKRD2Q9GZV1 360 aa14.82□□□□□ -0.04
USP3-220ENST00000561381 ANKRD18BA2A2Z9 1011 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 WNT10BO00744 389 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 TAF5LO75529 589 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 SLC10A3P09131 477 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 EPHA10Q5JZY3 1008 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 TTLL5Q6EMB2 1281 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 CHMP3Q9Y3E7 222 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 PITPNM2Q9BZ72 1349 aa14.81□□□□□ -0.04
USP3-220ENST00000561381 SASH1O94885 1247 aa14.8□□□□□ -0.04
USP3-220ENST00000561381 CD44P16070 742 aaKnown RBP14.8□□□□□ -0.04
USP3-220ENST00000561381 KCNJ4P48050 445 aa14.8□□□□□ -0.04
USP3-220ENST00000561381 GTF2IP78347 998 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms