RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PCDHA7Q9UN72 937 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 TMEM2Q9UHN6 1383 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 TBC1D8O95759 1140 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 TFRCP02786 760 aaKnown RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 PSMA5P28066 241 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 LMOD1P29536 600 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 BMS1Q14692 1282 aaKnown RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 NCAPHQ15003 741 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 EPHA10Q5JZY3 1008 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 KLHL34Q8N239 644 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 RAPGEF4Q8WZA2 1011 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 OSBPL5Q9H0X9 879 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 CHD2O14647 1828 aaKnown RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 ADGRL3Q9HAR2 1447 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 PXDNLA1KZ92 1463 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 SPATA31D1Q6ZQQ2 1576 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 LRRC37A3O60309 1634 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 TMEM232C9JQI7 657 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 GIGYF1O75420 1035 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 NEXNQ0ZGT2 675 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 RAB11FIP4Q86YS3 637 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 REXO1L1PQ8IX06 675 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 FMR1NBQ8N0W7 255 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 NEK1Q96PY6 1258 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 DNAJC2Q99543 621 aaKnown RBP5.66□□□□□ -1.5
LIMA1-214ENST00000552783 CALCOCO1Q9P1Z2 691 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 CLIC4Q9Y696 253 aa5.66□□□□□ -1.5
LIMA1-214ENST00000552783 N4BP2Q86UW6 1770 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-214ENST00000552783 A0A0U1RQJ8 604 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 PTPDC1A2A3K4 754 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 TADA3O75528 432 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 POLR3DP05423 398 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-214ENST00000552783 FAM160A1Q05DH4 1040 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 MTX1Q13505 466 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 PLEKHO1Q53GL0 409 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-214ENST00000552783 KRBA2Q6ZNG9 492 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 HOMER1Q86YM7 354 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 ATRIPQ8WXE1 791 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 NEUROD6Q96NK8 337 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 WDR24Q96S15 920 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 SNRKQ9NRH2 765 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 KCND1Q9NSA2 647 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 PARP3Q9Y6F1 533 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 NWD1Q149M9 1564 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 CACNA1FO60840 1977 aa5.65□□□□□ -1.5
LIMA1-214ENST00000552783 NALCNQ8IZF0 1738 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 AGLP35573 1532 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 ZNF609O15014 1411 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 SBNO1A3KN83 1393 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 H3BQF6 201 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 NEMFO60524 1076 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 KINO60870 393 aaKnown RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 URI1O94763 535 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 FDPSP14324 419 aaKnown RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 NBPF6Q5VWK0 638 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 TTC5Q8N0Z6 440 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 SMARCC2Q8TAQ2 1214 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 NBPF4Q96M43 638 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 UTP14AQ9BVJ6 771 aaKnown RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 UBXN6Q9BZV1 441 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 ANO10Q9NW15 660 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 PLEKHG3A1L390 1219 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 OAS2P29728 719 aaKnown RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 ETF1P62495 437 aaKnown RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 USPL1Q5W0Q7 1092 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 FOXR1Q6PIV2 292 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 SDF4Q9BRK5 362 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 IRX2Q9BZI1 471 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 DBNLQ9UJU6 430 aaKnown RBP5.65□□□□□ -1.51
LIMA1-214ENST00000552783 CFAP45Q9UL16 551 aa5.65□□□□□ -1.51
LIMA1-214ENST00000552783 FMN2Q9NZ56 1722 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 DDX58O95786 925 aaKnown RBP5.64□□□□□ -1.51
LIMA1-214ENST00000552783 SFPQP23246 707 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIMA1-214ENST00000552783 ANKRD1Q15327 319 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 HSP90AB4PQ58FF6 505 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 CCDC73Q6ZRK6 1079 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 DDX46Q7L014 1031 aaKnown RBP5.64□□□□□ -1.51
LIMA1-214ENST00000552783 CEP57L1Q8IYX8 460 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 CCDC85AQ96PX6 553 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-214ENST00000552783 ALDH8A1Q9H2A2 487 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-214ENST00000552783 ZSWIM4Q9H7M6 989 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 SUGCTQ9HAC7 445 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 JCADQ9P266 1359 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 VWA3AA6NCI4 1184 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 ANKRD65E5RJM6 399 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 TSGA10IPQ3SY00 556 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 RNF20Q5VTR2 975 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 PROSER2Q86WR7 435 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-214ENST00000552783 C10orf67Q8IYJ2 551 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 UBXN4Q92575 508 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 CHMP4CQ96CF2 233 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 INTS13Q9NVM9 706 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 KIAA1468Q9P260 1216 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 MROH7-TTC4A0A0A0MT08 1334 aa5.64□□□□□ -1.51
LIMA1-214ENST00000552783 ATP5J2-PTCD1G3V325 749 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 PTCD1O75127 700 aaKnown RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 ALDH1L1O75891 902 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 IGKV5-2P06315 115 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 EVCP57679 992 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms