RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 RNF214Q8ND24 703 aa13.21□□□□□ -0.3
CUX1-212ENST00000547394 NCOA5Q9HCD5 579 aaKnown RBP13.21□□□□□ -0.3
CUX1-212ENST00000547394 TCHHQ07283 1943 aa13.21□□□□□ -0.3
CUX1-212ENST00000547394 PDE8AO60658 829 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 APOBRQ0VD83 1088 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 GPR108Q9NPR9 543 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 AHDC1Q5TGY3 1603 aaPredicted RBP13.2□□□□□ -0.3
CUX1-212ENST00000547394 CAMTA2O94983 1202 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 SLC51AQ86UW1 340 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 LINC00116Q8NCU8 138 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 MTMR6Q9Y217 621 aa13.2□□□□□ -0.3
CUX1-212ENST00000547394 FOXP2O15409 715 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 MRE11P49959 708 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 USPL1Q5W0Q7 1092 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 LARP1BQ659C4 914 aaKnown RBP13.19□□□□□ -0.3
CUX1-212ENST00000547394 NKX2-3Q8TAU0 364 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 PLA2G12BQ9BX93 195 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 PIH1D3Q9NQM4 214 aaKnown RBP13.19□□□□□ -0.3
CUX1-212ENST00000547394 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.19□□□□□ -0.3
CUX1-212ENST00000547394 AKAP2Q9Y2D5 859 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 U3KPZ7 1027 aaPredicted RBP13.19□□□□□ -0.3
CUX1-212ENST00000547394 PLCH1Q4KWH8 1693 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 KDM4AO75164 1064 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 F13A1P00488 732 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 AMIGO3Q86WK7 504 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 LRP6O75581 1613 aa13.19□□□□□ -0.3
CUX1-212ENST00000547394 INCENPQ9NQS7 918 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 SRP68Q9UHB9 627 aaKnown RBP13.18□□□□□ -0.3
CUX1-212ENST00000547394 SH3TC1Q8TE82 1336 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 MYH14Q7Z406 1995 aaKnown RBP13.18□□□□□ -0.3
CUX1-212ENST00000547394 PDE8BO95263 885 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 SLC9C2Q5TAH2 1124 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 CCDC102BQ68D86 513 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 VGLL2Q8N8G2 317 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 UTP14AQ9BVJ6 771 aaKnown RBP13.18□□□□□ -0.3
CUX1-212ENST00000547394 RBSNQ9H1K0 784 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 WWC3Q9ULE0 1092 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 CDHR2Q9BYE9 1310 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 E7EWF7 191 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 MPHOSPH8Q99549 860 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 HMG20BQ9P0W2 317 aa13.18□□□□□ -0.3
CUX1-212ENST00000547394 TFIP11Q9UBB9 837 aaKnown RBP13.18□□□□□ -0.3
CUX1-212ENST00000547394 SH2B1Q9NRF2 756 aaPredicted RBP13.17□□□□□ -0.3
CUX1-212ENST00000547394 HELLSQ9NRZ9 838 aa13.17□□□□□ -0.3
CUX1-212ENST00000547394 JCADQ9P266 1359 aa13.17□□□□□ -0.3
CUX1-212ENST00000547394 ERVV-1B6SEH8 477 aa13.17□□□□□ -0.3
CUX1-212ENST00000547394 APPP05067 770 aa13.17□□□□□ -0.3
CUX1-212ENST00000547394 BCAMP50895 628 aa13.17□□□□□ -0.3
CUX1-212ENST00000547394 GUCY1B3Q02153 619 aa13.17□□□□□ -0.3
CUX1-212ENST00000547394 ZSCAN31Q96LW9 406 aaPredicted RBP13.17□□□□□ -0.3
CUX1-212ENST00000547394 FGAP02671 866 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 SCRN1Q12765 414 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 ERFEQ4G0M1 354 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 THRAP3Q9Y2W1 955 aaKnown RBP13.16□□□□□ -0.3
CUX1-212ENST00000547394 NUP98P52948 1817 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.16□□□□□ -0.3
CUX1-212ENST00000547394 GPAA1O43292 621 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 PHF14O94880 888 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 PTMSP20962 102 aa13.16□□□□□ -0.3
CUX1-212ENST00000547394 CEBPZQ03701 1054 aaKnown RBP13.16□□□□□ -0.3
CUX1-212ENST00000547394 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
CUX1-212ENST00000547394 NASPP49321 788 aaPredicted RBP13.15□□□□□ -0.3
CUX1-212ENST00000547394 NTSR2O95665 410 aa13.15□□□□□ -0.3
CUX1-212ENST00000547394 COL4A1P02462 1669 aa13.15□□□□□ -0.3
CUX1-212ENST00000547394 RASGRF1Q13972 1273 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 RRAGDQ9NQL2 400 aaPredicted RBP13.14□□□□□ -0.31
CUX1-212ENST00000547394 ZNF532Q9HCE3 1301 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 COL22A1Q8NFW1 1626 aaPredicted RBP13.14□□□□□ -0.31
CUX1-212ENST00000547394 RXRAP19793 462 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 GTF2E1P29083 439 aaPredicted RBP13.14□□□□□ -0.31
CUX1-212ENST00000547394 KRT32Q14532 448 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 TSGA10IPQ3SY00 556 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 MPNDQ8N594 471 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 USP21Q9UK80 565 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 JAG2Q9Y219 1238 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 TBC1D9BQ66K14 1250 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 DHX32Q7L7V1 743 aaKnown RBP13.14□□□□□ -0.31
CUX1-212ENST00000547394 GTF3C6Q969F1 213 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 DSCC1Q9BVC3 393 aa13.14□□□□□ -0.31
CUX1-212ENST00000547394 ANKRD1Q15327 319 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 PUM3Q15397 648 aaKnown RBP13.13□□□□□ -0.31
CUX1-212ENST00000547394 OTUD7BQ6GQQ9 843 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 BARGINQ6ZT62 677 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 MIGA1Q8NAN2 632 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 FTOQ9C0B1 505 aaKnown RBP eCLIP13.13□□□□□ -0.31
CUX1-212ENST00000547394 GJB4Q9NTQ9 266 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 GNPATO15228 680 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 GYG1P46976 350 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 MAGEB6Q8N7X4 407 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 APPBP2Q92624 585 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 BCL9LQ86UU0 1499 aa13.13□□□□□ -0.31
CUX1-212ENST00000547394 PRKAB2O43741 272 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 PDE6AP16499 860 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 CHRNDQ07001 517 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 SMIM22K7EJ46 135 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 CTDNEP1O95476 244 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 ZNF445P59923 1031 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 NRAPQ86VF7 1730 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 TAF1P21675 1872 aa13.12□□□□□ -0.31
CUX1-212ENST00000547394 MYO5AQ9Y4I1 1855 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms