RNA–Protein interactions for RNA: ENST00000545668.5

DDX11-229, Transcript of DEAD/H-box helicase 11, human

TSL 1 (best) BASIC

Gene DDX11, Length 3,751 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-229	ENST00000545668	IFIT1	P09914	478 aa	Known RBP	11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	CYP19A1	P11511	503 aa	Predicted RBP	11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	DDB1	Q16531	1140 aa		11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	SKIDA1	Q1XH10	827 aa		11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	CCDC129	Q6ZRS4	1044 aa		11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	SEC62	Q99442	399 aa	Known RBP	11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	ZBTB1	Q9Y2K1	713 aa		11.44	□□□□□ -0.58
DDX11-229	ENST00000545668	DYNC1I1	O14576	645 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	CIAO1	O76071	339 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	LETM1	O95202	739 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	MCM5	P33992	734 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	MCMDC2	Q4G0Z9	681 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	HSP90AB3P	Q58FF7	597 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	LUZP1	Q86V48	1076 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	KBTBD3	Q8NAB2	608 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	KCNB2	Q92953	911 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	TBC1D2B	Q9UPU7	963 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	U2AF2	P26368	475 aa	Known RBP eCLIP	11.43	□□□□□ -0.58	2e-7	■■■□□ 17.2
DDX11-229	ENST00000545668	SYNE4	Q8N205	404 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	SLC4A9	Q96Q91	983 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	SNRK	Q9NRH2	765 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	TRMT112	Q9UI30	125 aa	Known RBP	11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	MED23	Q9ULK4	1368 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	BCL9	O00512	1426 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	HMGN5	P82970	282 aa	Known RBP	11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	CCDC158	Q5M9N0	1113 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	FILIP1	Q7Z7B0	1213 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	PDLIM2	Q96JY6	352 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	CCDC94	Q9BW85	323 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	HMG20B	Q9P0W2	317 aa		11.43	□□□□□ -0.58
DDX11-229	ENST00000545668	PIP4K2B	P78356	416 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	MAP3K11	Q16584	847 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	ACSBG1	Q96GR2	724 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	AKAP2	Q9Y2D5	859 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	SHANK3	Q9BYB0	1731 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	GUCY1B3	Q02153	619 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	TRIM34	Q9BYJ4	488 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	DACT1	Q9NYF0	836 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	TNNT1	P13805	278 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	TTC39A	Q5SRH9	613 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	NLRP10	Q86W26	655 aa		11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	DZIP3	Q86Y13	1208 aa	Known RBP	11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.42	□□□□□ -0.58
DDX11-229	ENST00000545668	DISP2	A7MBM2	1401 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	TPD52L1	Q16890	204 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	CHMP4C	Q96CF2	233 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	PTGS1	P23219	599 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	KRT32	Q14532	448 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	ANKRD1	Q15327	319 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	ME3	Q16798	604 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	LDHAL6A	Q6ZMR3	332 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	CCDC186	Q7Z3E2	898 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	TAF6L	Q9Y6J9	622 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668		U3KPZ7	1027 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	TOGARAM1	Q9Y4F4	1720 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	PAPPA	Q13219	1627 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	ROBO1	Q9Y6N7	1651 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	IRS4	O14654	1257 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	SF3A1	Q15459	793 aa	Known RBP	11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	CNNM1	Q9NRU3	951 aa		11.41	□□□□□ -0.58
DDX11-229	ENST00000545668	COL14A1	Q05707	1796 aa	Known RBP	11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	ITGA6	P23229	1130 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	SLFNL1	Q499Z3	407 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	METTL24	Q5JXM2	366 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	TPCN1	Q9ULQ1	816 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	RPS6KB1	P23443	525 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	XAGE2	Q96GT9	111 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	ZNF609	O15014	1411 aa		11.4	□□□□□ -0.58
DDX11-229	ENST00000545668	ANKRD18B	A2A2Z9	1011 aa		11.4	□□□□□ -0.59
DDX11-229	ENST00000545668	CSF1R	P07333	972 aa		11.4	□□□□□ -0.59
DDX11-229	ENST00000545668	ATP6V1A	P38606	617 aa		11.4	□□□□□ -0.59
DDX11-229	ENST00000545668	PLA2G12B	Q9BX93	195 aa		11.4	□□□□□ -0.59
DDX11-229	ENST00000545668	GREM2	Q9H772	168 aa		11.4	□□□□□ -0.59
DDX11-229	ENST00000545668	FBXO3	Q9UK99	471 aa		11.4	□□□□□ -0.59
DDX11-229	ENST00000545668	RFX7	Q2KHR2	1363 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	PDC	P20941	246 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	IL6ST	P40189	918 aa	Predicted RBP	11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	ANO6	Q4KMQ2	910 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	NEK1	Q96PY6	1258 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	SPATA31A1	Q5TZJ5	1347 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	NUP188	Q5SRE5	1749 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	ADORA1	P30542	326 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	COL9A3	Q14050	684 aa	Predicted RBP	11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	CDC37L1	Q7L3B6	337 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	TTLL11	Q8NHH1	800 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	HELLS	Q9NRZ9	838 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	CCT2	P78371	535 aa	Known RBP	11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	IRX3	P78415	501 aa	Predicted RBP	11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	WASHC4	Q2M389	1173 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	USPL1	Q5W0Q7	1092 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	TOMM22	Q9NS69	142 aa		11.39	□□□□□ -0.59
DDX11-229	ENST00000545668	RNF113A	O15541	343 aa	Known RBP	11.38	□□□□□ -0.59
DDX11-229	ENST00000545668	LIG1	P18858	919 aa		11.38	□□□□□ -0.59
DDX11-229	ENST00000545668	CTSW	P56202	376 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms