RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 XAGE2Q96GT9 111 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.69□□□□□ -0.54
SS18-205ENST00000542420 TSPY26PQ9H489 355 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 ZSCAN16Q9H4T2 348 aaPredicted RBP11.69□□□□□ -0.54
SS18-205ENST00000542420 MAST3O60307 1309 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 CPA1P15085 419 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 TIMM10P62072 90 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 FGD1P98174 961 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 ZNF274Q96GC6 653 aaPredicted RBP11.68□□□□□ -0.54
SS18-205ENST00000542420 SCAND2PQ9GZW5 306 aaPredicted RBP11.68□□□□□ -0.54
SS18-205ENST00000542420 SCN7AQ01118 1682 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 HSPD1P10809 573 aaKnown RBP11.68□□□□□ -0.54
SS18-205ENST00000542420 PRIM1P49642 420 aaKnown RBP11.68□□□□□ -0.54
SS18-205ENST00000542420 EIF5P55010 431 aaKnown RBP11.68□□□□□ -0.54
SS18-205ENST00000542420 ATP2B3Q16720 1220 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 VGLL2Q8N8G2 317 aa11.68□□□□□ -0.54
SS18-205ENST00000542420 SMARCC1Q92922 1105 aaPredicted RBP11.68□□□□□ -0.54
SS18-205ENST00000542420 TIAM2Q8IVF5 1701 aa11.67□□□□□ -0.54
SS18-205ENST00000542420 CARMIL3Q8ND23 1372 aa11.67□□□□□ -0.54
SS18-205ENST00000542420 ARID4AP29374 1257 aaPredicted RBP11.67□□□□□ -0.54
SS18-205ENST00000542420 GORABQ5T7V8 394 aa11.67□□□□□ -0.54
SS18-205ENST00000542420 NAA16Q6N069 864 aaPredicted RBP11.67□□□□□ -0.54
SS18-205ENST00000542420 SLC4A9Q96Q91 983 aa11.67□□□□□ -0.54
SS18-205ENST00000542420 PUS3Q9BZE2 481 aaKnown RBP11.67□□□□□ -0.54
SS18-205ENST00000542420 MYH14Q7Z406 1995 aaKnown RBP11.67□□□□□ -0.54
SS18-205ENST00000542420 IRS4O14654 1257 aaPredicted RBP11.66□□□□□ -0.54
SS18-205ENST00000542420 MCM5P33992 734 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 Q6ZUG5 572 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 DZIP3Q86Y13 1208 aaKnown RBP11.66□□□□□ -0.54
SS18-205ENST00000542420 ZNF594Q96JF6 807 aaPredicted RBP11.66□□□□□ -0.54
SS18-205ENST00000542420 RBSNQ9H1K0 784 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 KAT6BQ8WYB5 2073 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 SPATA31A5Q5VU36 1347 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 SPATA31A7Q8IWB4 1347 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 SYCE3A1L190 88 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 ITGA6P23229 1130 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 UBE3CQ15386 1083 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 FAM89AQ96GI7 184 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 CCDC87Q9NVE4 849 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 RBM27Q9P2N5 1060 aaKnown RBP11.66□□□□□ -0.54
SS18-205ENST00000542420 CNPY2Q9Y2B0 182 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 ZBTB1Q9Y2K1 713 aa11.66□□□□□ -0.54
SS18-205ENST00000542420 A0A0U1RQG5 324 aaPredicted RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 ESPNB1AK53 854 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 C4AP0C0L4 1744 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 C4BP0C0L5 1744 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 HLFQ16534 295 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 COL24A1Q17RW2 1714 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 METTL24Q5JXM2 366 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 FOXD4L5Q5VV16 416 aaPredicted RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 LDHAL6AQ6ZMR3 332 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 FOXD4L4Q8WXT5 416 aaPredicted RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 NSFL1CQ9UNZ2 370 aaKnown RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 MYO5AQ9Y4I1 1855 aaKnown RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 E7EWF7 191 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 PDE8BO95263 885 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 DDB1Q16531 1140 aa11.65□□□□□ -0.54
SS18-205ENST00000542420 IMMTQ16891 758 aaKnown RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 SEC62Q99442 399 aaKnown RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 TRMT112Q9UI30 125 aaKnown RBP11.65□□□□□ -0.54
SS18-205ENST00000542420 GADD45BO75293 160 aaPredicted RBP11.64□□□□□ -0.55
SS18-205ENST00000542420 FGFR2P21802 821 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 PUM3Q15397 648 aaKnown RBP11.64□□□□□ -0.55
SS18-205ENST00000542420 CCDC129Q6ZRS4 1044 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 POTEDQ86YR6 584 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 NECAB1Q8N987 351 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 LPIN2Q92539 896 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 SALL1Q9NSC2 1324 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 VPS37CA5D8V6 355 aaPredicted RBP11.64□□□□□ -0.55
SS18-205ENST00000542420 ALX1Q15699 326 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 STOX1Q6ZVD7 989 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 ZSCAN30Q86W11 494 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 CFAP45Q9UL16 551 aa11.64□□□□□ -0.55
SS18-205ENST00000542420 ADD2P35612 726 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 DNM1Q05193 864 aaKnown RBP11.63□□□□□ -0.55
SS18-205ENST00000542420 INTS5Q6P9B9 1019 aaKnown RBP11.63□□□□□ -0.55
SS18-205ENST00000542420 CLEC4GQ6UXB4 293 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 OSBP2Q969R2 916 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 PDCL3Q9H2J4 239 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 GREM2Q9H772 168 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 CNNM1Q9NRU3 951 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 TAF6LQ9Y6J9 622 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 NHSQ6T4R5 1651 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 M0R2C6 588 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 DHX16O60231 1041 aaKnown RBP11.63□□□□□ -0.55
SS18-205ENST00000542420 RESTQ13127 1097 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 DDX19AQ9NUU7 478 aaKnown RBP11.63□□□□□ -0.55
SS18-205ENST00000542420 ZNF652Q9Y2D9 606 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 UBN2Q6ZU65 1347 aa11.63□□□□□ -0.55
SS18-205ENST00000542420 KIAA1551Q9HCM1 1747 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 IGSF3O75054 1194 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 SLC5A1P13866 664 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 ADORA1P30542 326 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 TMED8Q6PL24 325 aaPredicted RBP11.62□□□□□ -0.55
SS18-205ENST00000542420 CDC37L1Q7L3B6 337 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 NSUN7Q8NE18 718 aaKnown RBP11.62□□□□□ -0.55
SS18-205ENST00000542420 BRF1Q92994 677 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 ARXQ96QS3 562 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 MTA3Q9BTC8 594 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 FUCA2Q9BTY2 467 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms