RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 ARHGEF25Q86VW2 580 aa18.65■□□□□ 0.58
VARS2-212ENST00000542001 DZIP3Q86Y13 1208 aaKnown RBP18.65■□□□□ 0.58
VARS2-212ENST00000542001 NIP7Q9Y221 180 aaKnown RBP eCLIP18.65■□□□□ 0.58
VARS2-212ENST00000542001 PHKG2P15735 406 aa18.64■□□□□ 0.58
VARS2-212ENST00000542001 TRIM34Q9BYJ4 488 aa18.64■□□□□ 0.58
VARS2-212ENST00000542001 ANKIB1Q9P2G1 1089 aa18.64■□□□□ 0.58
VARS2-212ENST00000542001 A2ML1A8K2U0 1454 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 HOXB7P09629 217 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 TRERF1Q96PN7 1200 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 ITGA6P23229 1130 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 ATP6V1AP38606 617 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 ARGLU1Q9NWB6 273 aaPredicted RBP18.64■□□□□ 0.57
VARS2-212ENST00000542001 IFNKQ9P0W0 207 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 ZNF219Q9P2Y4 722 aaPredicted RBP18.64■□□□□ 0.57
VARS2-212ENST00000542001 KIF18AQ8NI77 898 aa18.64■□□□□ 0.57
VARS2-212ENST00000542001 CCDC47Q96A33 483 aaKnown RBP18.64■□□□□ 0.57
VARS2-212ENST00000542001 SMTNL1A8MU46 457 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 ADORA1P30542 326 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 MKNK2Q9HBH9 465 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 SNAP23O00161 211 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 GPAA1O43292 621 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 CAVIN4Q5BKX8 364 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 UBXN4Q92575 508 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 RNF216Q9NWF9 866 aaPredicted RBP18.63■□□□□ 0.57
VARS2-212ENST00000542001 QRICH2Q9H0J4 1663 aa18.63■□□□□ 0.57
VARS2-212ENST00000542001 ENOX2Q16206 610 aaKnown RBP18.63■□□□□ 0.57
VARS2-212ENST00000542001 TEX35Q5T0J7 233 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 GJB4Q9NTQ9 266 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 PPRC1Q5VV67 1664 aaKnown RBP18.62■□□□□ 0.57
VARS2-212ENST00000542001 MBD4O95243 580 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 CYP21A2P08686 494 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 DNA2P51530 1060 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 ZSWIM6Q9HCJ5 1215 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 STX8Q9UNK0 236 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 TXLNAP40222 546 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 CEP135Q66GS9 1140 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 CAGE1Q8TC20 777 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 USP28Q96RU2 1077 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 ARMT1Q9H993 441 aa18.62■□□□□ 0.57
VARS2-212ENST00000542001 CTAGE5O15320 804 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 WTAPQ15007 396 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 KIF24Q5T7B8 1368 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 ADD1P35611 737 aaKnown RBP18.61■□□□□ 0.57
VARS2-212ENST00000542001 NRBP1Q9UHY1 535 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 CDK12Q9NYV4 1490 aaPredicted RBP18.61■□□□□ 0.57
VARS2-212ENST00000542001 POLR3GO15318 223 aaPredicted RBP18.61■□□□□ 0.57
VARS2-212ENST00000542001 UBASH3AP57075 661 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 NLRP5P59047 1200 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 CCDC102BQ68D86 513 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 IQCA1Q86XH1 822 aa18.61■□□□□ 0.57
VARS2-212ENST00000542001 DZIP1Q86YF9 867 aaKnown RBP18.61■□□□□ 0.57
VARS2-212ENST00000542001 E7EWF7 191 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 KCNQ4P56696 695 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 PLIN2Q99541 437 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 ALKQ9UM73 1620 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 ADGRB3O60242 1522 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 PDIA4P13667 645 aaKnown RBP18.6■□□□□ 0.57
VARS2-212ENST00000542001 CTDSPL2Q05D32 466 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 SYNE4Q8N205 404 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 CTCFLQ8NI51 663 aaPredicted RBP18.6■□□□□ 0.57
VARS2-212ENST00000542001 BABAM1Q9NWV8 329 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 IGKV5-2P06315 115 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 TRMT1LQ7Z2T5 733 aaKnown RBP18.6■□□□□ 0.57
VARS2-212ENST00000542001 DNAI1Q9UI46 699 aa18.6■□□□□ 0.57
VARS2-212ENST00000542001 CUL4AQ13619 759 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 STAMQ92783 540 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 TSPY2A6NKD2 308 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 ATP5JP18859 108 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 KLHL34Q8N239 644 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 MAP4K1Q92918 833 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 CDK5RAP3Q96JB5 506 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 ASAP1Q9ULH1 1129 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 AOX1Q06278 1338 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 CLASP1Q7Z460 1538 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 DYNC1I1O14576 645 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 PPP1R9BQ96SB3 815 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 TANGO6Q9C0B7 1094 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 SNW1Q13573 536 aaKnown RBP18.59■□□□□ 0.57
VARS2-212ENST00000542001 GPIHBP1Q8IV16 184 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 DHX58Q96C10 678 aa18.59■□□□□ 0.57
VARS2-212ENST00000542001 RBM5P52756 815 aaKnown RBP eCLIP18.58■□□□□ 0.57
VARS2-212ENST00000542001 NGLY1Q96IV0 654 aa18.58■□□□□ 0.57
VARS2-212ENST00000542001 RTN1Q16799 776 aa18.58■□□□□ 0.56
VARS2-212ENST00000542001 ZSCAN29Q8IWY8 852 aaPredicted RBP18.58■□□□□ 0.56
VARS2-212ENST00000542001 ARHGAP29Q52LW3 1261 aa18.58■□□□□ 0.56
VARS2-212ENST00000542001 KCNJ14Q9UNX9 436 aa18.58■□□□□ 0.56
VARS2-212ENST00000542001 HSPD1P10809 573 aaKnown RBP18.57■□□□□ 0.56
VARS2-212ENST00000542001 MAGEC2Q9UBF1 373 aaPredicted RBP18.57■□□□□ 0.56
VARS2-212ENST00000542001 CPS1P31327 1500 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 CBFA2T2O43439 604 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 WASF1Q92558 559 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 TAF6LQ9Y6J9 622 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 ZPR1O75312 459 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 ZFYP08048 801 aaPredicted RBP18.57■□□□□ 0.56
VARS2-212ENST00000542001 FAM193AP78312 1265 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 GTF3C6Q969F1 213 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 KDRP35968 1356 aa18.57■□□□□ 0.56
VARS2-212ENST00000542001 RIOK3O14730 519 aaKnown RBP18.56■□□□□ 0.56
VARS2-212ENST00000542001 GNG11P61952 73 aa18.56■□□□□ 0.56
VARS2-212ENST00000542001 SCRN1Q12765 414 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms