RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 USP44Q9H0E7 712 aa8.3□□□□□ -1.08
CLTCL1-206ENST00000540896 CWC25Q9NXE8 425 aaPredicted RBP8.3□□□□□ -1.08
CLTCL1-206ENST00000540896 ZNF652Q9Y2D9 606 aa8.3□□□□□ -1.08
CLTCL1-206ENST00000540896 PCDHB15Q9Y5E8 787 aa8.3□□□□□ -1.08
CLTCL1-206ENST00000540896 LAMB4A4D0S4 1761 aa8.3□□□□□ -1.08
CLTCL1-206ENST00000540896 TESPA1A2RU30 521 aaPredicted RBP8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 GRM8O00222 908 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 IGKV5-2P06315 115 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 CFHP08603 1231 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 GPTP24298 496 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 GCKRQ14397 625 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 HLFQ16534 295 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 GIGYF2Q6Y7W6 1299 aaKnown RBP8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 PXYLP1Q8TE99 480 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 PDZRN3Q9UPQ7 1066 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 UBR3Q6ZT12 1888 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 ATP10DQ9P241 1426 aa8.29□□□□□ -1.08
CLTCL1-206ENST00000540896 PXDNLA1KZ92 1463 aa8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 COL15A1P39059 1388 aa8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 HMMRO75330 724 aa8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 NBPF7P0C2Y1 421 aaPredicted RBP8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 RTL5Q5HYW3 569 aaPredicted RBP8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 CENPQQ7L2Z9 268 aaPredicted RBP8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 RPAP2Q8IXW5 612 aaPredicted RBP8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 CCDC191Q8NCU4 936 aa8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 JARID2Q92833 1246 aaPredicted RBP8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 LRRFIP2Q9Y608 721 aaKnown RBP8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 TUBGCP6Q96RT7 1819 aa8.28□□□□□ -1.08
CLTCL1-206ENST00000540896 QSER1Q2KHR3 1735 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 ZBTB7AO95365 584 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 IGHDP01880 384 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 SLC19A1P41440 591 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 TRIM28Q13263 835 aaKnown RBP8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 UBE3BQ7Z3V4 1068 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 ANKLE1Q8NAG6 615 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 SLC16A10Q8TF71 515 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 ISCA1Q9BUE6 129 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 SRP68Q9UHB9 627 aaKnown RBP8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 NARFQ9UHQ1 456 aa8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 NIP7Q9Y221 180 aaKnown RBP eCLIP8.27□□□□□ -1.09
CLTCL1-206ENST00000540896 CACNA1FO60840 1977 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 FAM177BA6PVY3 158 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 RNF223E7ERA6 249 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 CAMTA2O94983 1202 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 GTF2E1P29083 439 aaPredicted RBP8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 ATP8B2P98198 1209 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 HDAC1Q13547 482 aaPredicted RBP8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 FAM161AQ3B820 660 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 USPL1Q5W0Q7 1092 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 MSL1Q68DK7 614 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 CEP85Q6P2H3 762 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 CLEC4GQ6UXB4 293 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 BICDL1Q6ZP65 573 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 NLRP10Q86W26 655 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 NLGN1Q8N2Q7 840 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 ANKRD44Q8N8A2 993 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 MTFR1LQ9H019 292 aa8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 TRMT112Q9UI30 125 aaKnown RBP8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 USP42Q9H9J4 1324 aaKnown RBP8.26□□□□□ -1.09
CLTCL1-206ENST00000540896 CASZ1Q86V15 1759 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 H7C1W4 665 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 NPHP1O15259 732 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 SRGAP3O43295 1099 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 ADH1BP00325 375 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 GYS1P13807 737 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 PRKCSHP14314 528 aaPredicted RBP8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 PARP10Q53GL7 1025 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 PPP1R42Q7Z4L9 355 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 METTL3Q86U44 580 aaKnown RBP8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 ZNF34Q8IZ26 560 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 FAM89AQ96GI7 184 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 SUCLG2Q96I99 432 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 SETDB2Q96T68 719 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 UTP14AQ9BVJ6 771 aaKnown RBP8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 BCL11AQ9H165 835 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 C4AP0C0L4 1744 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 UTYO14607 1347 aa8.25□□□□□ -1.09
CLTCL1-206ENST00000540896 PCCAP05165 728 aaPredicted RBP8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 SLC10A3P09131 477 aa8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 HSP90B1P14625 803 aaKnown RBP8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 SIRT2Q8IXJ6 389 aa8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 ZBTB38Q8NAP3 1195 aaPredicted RBP8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 GCC1Q96CN9 775 aa8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 BICC1Q9H694 974 aaKnown RBP8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 SPON1Q9HCB6 807 aa8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 DAXXQ9UER7 740 aaPredicted RBP8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 CHMP3Q9Y3E7 222 aa8.24□□□□□ -1.09
CLTCL1-206ENST00000540896 APBB1O00213 710 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 SURF6O75683 361 aaKnown RBP8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 POLD1P28340 1107 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 TM4SF1P30408 202 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 OS9Q13438 667 aaPredicted RBP8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 SUSD4Q5VX71 490 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 TBC1D9BQ66K14 1250 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 NBPF5PQ86XG9 351 aaPredicted RBP8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 KDM2BQ8NHM5 1336 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 SH3TC1Q8TE82 1336 aa8.23□□□□□ -1.09
CLTCL1-206ENST00000540896 IBTKQ9P2D0 1353 aaPredicted RBP8.22□□□□□ -1.09
CLTCL1-206ENST00000540896 PNMA6EA0A0J9YXQ4 647 aa8.22□□□□□ -1.09
CLTCL1-206ENST00000540896 IRS4O14654 1257 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms